Detailed information on CNT30109709


BLAST search results

BLAST vs Swiss-Prot:
sp|O65857|GSTF1_ORYSJ, E-value = 3e-93

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690457Oryza longistaminataOryza sativa63.5626.0280.89403forward
CNT30472257Oryza longistaminataSaccharum spontaneum18.4528.0688.89117forward
CNT30132314Oryza longistaminataLolium perenne32.0229.4285.22203forward
CNT30678882Oryza longistaminataTriticum urartu19.5623.487.9124forward
CNT30361429Oryza longistaminataSorghum bicolor19.2422.3484.43122forward
CNT30595599Oryza longistaminataOryza meridionalis16.425.9485.58104forward
CNT30594623Oryza longistaminataEragrostis curvula13.4131.2588.2485forward

Expression of CNT30109709

Peptides detected in this lncRNA

>peptide 1 (49 aa)
RXXXXXXXXXXXXXXXXXXPLPPCLHMRVRVEQRRARCPHEVEGVGEVV*

>peptide 2 (86 aa)
MAGLMMHSYTIGEIAELYWCVSTSVQTSTMAASLKLPSRSRSASLVLYLRRMYFPIARDSETDMTKVRFLLLQCSLLIVESDLNYR*

>peptide 3 (40 aa)
TXXXXXXXXXXXXXXXXXXASPTMPSHEGTSRTATRTVSP*

Sequence

>CNT30109709
ACGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCTCTCCCACCATGCCTTCACATGAGGGTACGAGTCGAACAG
CGACGCGCACGGTGTCCCCATGAAGTAGAAGGTGTAGGGGAAGTGGTTTAGGTCGGCGAAGCTGACGAAGTCGCCTGCGAGGTACGTGCTCTGTGACAGT
CGTGCCTCGTACACCTCCAGCACCTTCTTCAGCTTCTCCACGCTCTCGTCCACGACCTTCTGGTTAGTTGGGATCCCACGCATGGCTGGGTTGATGATGC
ACTCGTACACAATCGGTGAGATCGCCGAGTTGTACTGGTGTGTCTCCACCTCGGTCCAGACATCCACCATGGCTGCCTCCCTCAAGTTGCCTTCCCGGAG
TAGGTCAGCTTCCCTCGTCTTGTACTTGCGTAGGATGTACTTTCCAATAGCGCGGGACTCTGAAACGGATATGACGAAAGTCAGATTTCTGCTACTACAG
TGCTCTCTACTGATAGTGGAAAGCGATCTAAATTATCGTTGATCTGATTTGATCAAAATATTTGGATCTATTTATAATACCACCTTGTTAGTTAGTGGTA
GTAGAAAAGTAAAGAGGTATTATGTTAAAAAAAA