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Detailed information on CNT30109688


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693215Oryza longistaminataOryza sativa69.6257.93100369forward
CNT30520501Oryza longistaminataSetaria italica21.134.6694.64112forward
CNT30640424Oryza longistaminataNymphaea colorata22.8314.5681.82121forward
CNT30190473Oryza longistaminataSecale cereale20.1914.1793.46107forward
CNT30289517Oryza longistaminataTriticum aestivum51.5149.3789.38273forward
CNT30221219Oryza longistaminataHordeum vulgare20.1916.0789.72107forward
CNT30387764Oryza longistaminataTriticum turgidum51.5130.7889.38273forward
CNT30569510Oryza longistaminataActinidia chinensis12.4531.7392.4266forward
CNT30592144Oryza longistaminataMusa acuminata11.726.9695.1662forward
CNT30553402Oryza longistaminataOryza glaberrima69.6270.55100369forward
CNT30436608Oryza longistaminataAegilops tauschii59.8144.0988.96317forward
CNT30254684Oryza longistaminataAvena sativa11.5127.1193.4461forward
CNT30657898Oryza longistaminataTriticum dicoccoides51.5137.3588.64273forward
CNT30139319Oryza longistaminataLolium perenne20.199.1596.26107forward
CNT30228928Oryza longistaminataAnanas comosus19.8126.9292.38105forward
CNT30653715Oryza longistaminataRosa chinensis25.4723.1685.93135forward
CNT30214941Oryza longistaminataHelianthus annuus14.5330.284.4277forward
CNT30680357Oryza longistaminataTriticum urartu28.6853.5287.5152forward
CNT30596194Oryza longistaminataOryza meridionalis69.6284.8399.19369forward
CNT30370054Oryza longistaminataOryza glumipatula69.6270.5599.19369forward
CNT30331328Oryza longistaminataDioscorea rotundata51.5153.2281.32273forward
CNT30101372Oryza longistaminataOryza rufipogon69.6248.94100369forward
CNT30576241Oryza longistaminataOryza barthii69.6255.66100369forward
CNT30116534Oryza longistaminataOryza nivara69.6285.42100369forward
CNT30604398Oryza longistaminataOryza punctata27.926.2685.81148forward
CNT30113851Oryza longistaminataFicus carica11.722.3896.7762forward

Expression of CNT30109688

Peptides detected in this lncRNA

>peptide 1 (47 aa)
SRGHCALGRWRRRRCRRGRRSCHRRPRRCRGCRRRRTGRRTTAPCTQ*

>peptide 2 (48 aa)
MPPKAQAMPRVPTPPHWSADDCTLYPMTVATVMYRNRSVAMNSAMSAR*

>peptide 3 (55 aa)
GVAGIALWVGGGEDGVDEDEDHATEGPGDAEGADAAALVGGRLHLVPNDGGDGDV*

Sequence

>CNT30109688
GGAGTCGCGGGCATTGCGCTTTGGGTCGGTGGCGGAGAAGACGGTGTAGACGAGGACGAAGATCATGCCACCGAAGGCCCAGGCGATGCCGAGGGTGCCG
ACGCCGCCGCACTGGTCGGCGGACGACTGCACCTTGTACCCAATGACGGTGGCGACGGTGATGTATAGGAACAGGAGCGTGGCGATGAACTCCGCAATGA
GCGCCCGGTAGAAGGACCACAGCCGGAGCTCGCCGACGTCGAACAGCGGCGCCGGCGGCGGGTCGGTGTAGTCCTTGGGCCGCACGTGCTCCGGCTCCTC
GCTCACCTCCTTCGACATTGCCGCTCCCTTCAGCAAGCTCAACACGCTACTCACTCTGAGCTAGCTTAGCTCTGCTCTCTCTTCTCTCCCTCTCTCTTCT
CTGATGGATGTGGAGAGGAGGGGAGCGTGGGACTGGCCGGTTTTATTGAGAGCGCGGTGCTGTCATTAATGGAAAAAAAAAAACGGCCCAGGTACAAGAG
AAGAGAAGGAAAGGTGTGTGTGGGCTTCTG