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Detailed information on CNT30109682


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695070Oryza longistaminataOryza sativa54.2226.6998.1315forward
CNT30102474Oryza longistaminataOryza rufipogon59.928.9398.28348reverse complement

Expression of CNT30109682

Peptides detected in this lncRNA

>peptide 1 (33 aa)
VFELQGLTTVTNDAQLLCSRVNPHSAGWISAVD*

>peptide 2 (37 aa)
MSAEFDPSVLKKPGYLLEEAETTTWQWLVTSVVSNCL*

Sequence

>CNT30109682
TCGTATTTGAATTGCAGGGCCTAACCACGGTAACTAATGATGCACAGCTGCTTTGCTCCAGGGTGAACCCTCACTCTGCTGGTTGGATTTCAGCCGTGGA
TTAGCAACTGGTTCATGTTCTGAAATTTTTATACTAACCATCCTCACTCTGTAGTATTTGAAATCAACCTTTCAGTTTGTTCTGAATTTTTATGCAGAAT
ATAACCATGCCAGTATTTTGGAATGAGTGCAGAATTTGATCCGTCGGTTCTGAAGAAACCCGGTTACTTATTAGAAGAAGCAGAGACCACAACTTGGCAG
TGGCTGGTCACTTCAGTGGTCTCCAATTGCCTTTGAATACGATAATGGGCACAATCAAACTACATGACGTAAGACCTTTTTGGCATGGGGGCACCAACAA
AAAAGTGTTGGGTTGATTATCGAAGCTGTCCAGTGACTATACCATAGGTGAGAGAAATTTGGATTTGCCCTTTTGCATGGTTTCGATTGATGGAAGATTT
GGGATGTTATTTTTAGCCAGGTGGCTTTGTAATTAATAATGTAATAACTCGTGATATCATTCTTTTCTTTATTATTAAACA