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Detailed information on CNT30109648


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000322, E-value = 1e-50

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30103030Oryza longistaminataOryza rufipogon28.925.4887.19203reverse complement

Expression of CNT30109648

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MRMARTESVNANDGINPLRLVWLCGPTLGNLGRQLPSTTSWPSP*

>peptide 2 (29 aa)
MMMGRIFSGTINLNMSLSRFVLLEKQHGV*

Sequence

>CNT30109648
AGACTACTTACAGAACTAATTGTATAAATGAGAGCTAATTTGTGAGACAATTTTTTTAATCTAATTAATCTATAATAAGCACATGTTTACTGTAGCATCA
CATAGGCTAATCATGGATTAATTAGGCTAGATAGATTTGTCTCGCGAATTAGTCCAGAGTTATGGAATGGGTTTTATCATTAGCCTACGTTTAATACTTC
TAATTAGTGTCTAAAAATCCAATGTGATAGGGACTAAAACTTTTTAACCCCATTCAAATAGCCCCTTATTTCCTAGTATGATGATGGGACGTATATTTTC
CGGTACGATAAATCTGAACATGTCTTTGTCGAGATTTGTTTTACTGGAAAAACAACATGGGGTGTGAAATCTACGATGCGAATGGCCCGGACTGAATCCG
TGAACGCTAACGATGGTATCAACCCACTCCGTCTGGTCTGGCTCTGCGGGCCCACACTAGGTAATCTGGGCCGTCAATTGCCGTCCACAACATCTTGGCC
CAGCCCATAACACTCCTGGTCCCACTTGCAGTGGGTGAGTTGGACACCGCTGCTTCCGCAGTAAACCCTAGCCCCCGCGCCGCCGCGCCCATATATAAGG
CTCACTCGCTGCTCCACCCCTCCCTCTTCTCTCGTGTCTCCGGCGGCGGCGAGCTCGTGATCTCAACCACCAGGAGGAACCCGGCGCTCGCCTCGATCTC
CG