Detailed information on CNT30109643


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT004778, E-value = 1e-164

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692932Oryza longistaminataOryza sativa10077.3795.1653forward
CNT30553335Oryza longistaminataOryza glaberrima97.492.5895.44636forward
CNT30596075Oryza longistaminataOryza meridionalis39.0547.7594.9255forward
CNT30370058Oryza longistaminataOryza glumipatula92.96102.7195.22607forward
CNT30101323Oryza longistaminataOryza rufipogon91.7395.9994.49599forward
CNT30576161Oryza longistaminataOryza barthii98.3293.1895.48642forward

Expression of CNT30109643

Peptides detected in this lncRNA

>peptide 1 (84 aa)
KAGYKITCNSSARALGRPERERFLPATSWSPLFYPSLRRPEIYACLLQLLVSCEFMRKHGYLALLLHALVLISRCMHGILVNPD*

>peptide 2 (37 aa)
AKPAIKSLATPVREPLGDQRGRGSSLLPPGLLSSIQV*

>peptide 3 (32 aa)
MWQAASVYLSFVCSCCLIVLYFNLYGCAQLLL*

Sequence

>CNT30109643
GCAAAGCCGGCTATAAAATCACTTGCAACTCCAGTGCGAGAGCCCTTGGGCGACCAGAGAGGGAGAGGTTCCTCCCTGCTACCTCCTGGTCTCCTCTCTT
CTATCCAAGTTTGAGAAGGCCAGAGATATATGCATGCTTGCTTCAGTTGCTTGTATCATGTGAGTTCATGCGCAAGCATGGATATCTAGCTCTATTACTG
CATGCATTGGTGTTAATTAGTAGGTGCATGCATGGCATCCTCGTCAATCCTGATTGATGTTTTGAACAACTGGTTATGTCTTTCACTTCATGCACGCGTG
CGTAAATGATGTATATAAGTTTCAGGAGATGAAGTGCTCACTACTGCTCAGATCAGGCAGCTAGCTAGCAGTGGCGGCTGGAGCCAAGCACATTGCTGAT
AGAGGCCGGCGAGCGGCATTGTTGCCGGCTGGAGAGAGGCTGGCCTTCACGCGGTGAACCAAGCTAGGATAGAAGAACAAAAAATGGGTCATGTGGCAAG
CAGCTTCTGTTTATTTATCTTTCGTTTGTTCATGCTGTTTGATTGTTCTCTACTTTAATTTGTACGGTTGTGCCCAGCTCCTTTTGTAGTTGCAGGCATT
AACTACGTACTCGATCTGCGGTGTTGAAATCTATGGAACTTCGTTTACGAGCC