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Detailed information on CNT30109544


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30102066Oryza longistaminataOryza rufipogon92.2648.1198.11954forward
CNT30116930Oryza longistaminataOryza nivara41.8835.798.15433forward

Expression of CNT30109544

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MITSSPHTHSESICDDQVDPLSSTVVCAVPLS*

>peptide 2 (32 aa)
MSSSETRLGLQNSCMCFFFHSEHSTMQSISWI*

>peptide 3 (45 aa)
MTQLWVHWNVAFSCGILCKIELDYLLIVFGGAAQYCVICPIHSIL*

>peptide 4 (37 aa)
MTPAPKEPIKTMRFLLVSNIILVVLFTFCFFQILYLL*

>peptide 5 (33 aa)
MFFSLDFFSPFCKRFDPNSNNSTNINGYTSNDE*

Sequence

>CNT30109544
CTTCATTCTTTTTTGTTTGATTTTCAATTTCGTGCTCCAATGATCTGCAGCTCATCCCTATCTCGATGATTACATCTTCTCCCCACACCCATTCAGAGTC
AATTTGTGATGACCAAGTGGATCCCCTTTCGTCTACTGTAGTTTGCGCAGTACCTCTCAGCTGAATCAGGATGTTTTTTTCATTAGATTTTTTTTCTCCA
TTCTGCAAGCGATTCGACCCTAACTCCAACAATTCAACTAATATAAATGGGTACACGAGCAATGATGAATGAGCTCCTCTGAAACCAGATTAGGTCTACA
AAATTCCTGCATGTGTTTTTTTTTTCATTCTGAACATAGCACTATGCAATCAATATCATGGATTTAAGTTAATTCACATCTATATTGGTTTAGATTTAGT
CAGGTTTCGTGCAGGAGATCAAAAGAGGGATTATGAGTGGATTCAAAGGTTTAGTGTTGAGGAATCCAGAACACACTGTAGGCTACTGTCCCTAATTGTT
GCTGCGGCTTCAAATAGCTAGTTTATCTTTGAGAATAATCATGACACCAGCACCAAAAGAACCCATAAAAACCATGAGATTCTTGTTAGTGAGCAATATC
ATTCTGGTAGTACTGTTTACTTTCTGTTTTTTTCAAATATTATATCTCCTGTAACTGATTTGTACTAATGCTTGTTTAGCTTTCTTGATTCGAGCCCTGC
TTTGCCTTGTGTATTGAAGCTCACTCACTACATAAAAAGCACAATAACTGAAGATAATTTGCTTCTAATCATGTCATGCATACATCTTCACTGAAATTCT
ACAGGGTGCTATGGATAGATGATGGACGGGCATGACCCAATTATGGGTGCACTGGAATGTTGCTTTCTCTTGTGGAATACTCTGTAAAATTGAGCTTGAC
TACCTATTAATTGTTTTTGGTGGTGCTGCCCAATATTGTGTCATTTGTCCAATTCATTCTATTTTATGAACTACTATCATTGACAGGCTACTATATTTAT
TGCCTGAAATGTTTATTATGGAGATGCACGTGCC