« Back to Oryza longistaminata search


Detailed information on CNT30109503


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONOSAT000299, E-value = 2e-168

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697283Oryza longistaminataOryza sativa10049.1699.51408forward
CNT30104240Oryza longistaminataOryza rufipogon10083.9599.51408forward

Expression of CNT30109503

Peptides detected in this lncRNA

>peptide 1 (71 aa)
STSPPPSLPPRRGRLLRDEDSMRGNVSSVISGGDEAFQVINDPASVSSPYVLLYIGIYPFKCHLLQTSVSK*

>peptide 2 (44 aa)
FHLAASVIAAAARAFAPRRGLDEGKCLQRHLRRRRGFPSDQRSC*

Sequence

>CNT30109503
TTTCCACCTCGCCGCCTCCGTCATTGCCGCCGCGGCGCGGGCGTTTGCTCCGCGACGAGGACTCGATGAGGGGAAATGTCTCCAGCGTCATCTCCGGCGG
CGACGAGGCTTTCCAAGTGATCAACGATCCTGCTAGTGTGAGTTCTCCCTATGTATTACTCTATATTGGCATTTATCCTTTTAAGTGCCATCTCCTTCAG
ACTTCAGTGAGCAAGTAGCATTTTGGTCTTCCTAGCAAGTAGCAACATATCATCACAAAATCAGATCTTATGATCTTGTGGTGTTTTTAATTTCTTCTCC
TAATTTTTTTAGGAGTCATAAATGCACCAAAGAGAGGATGTTTGTTTCTTTATTTATGACGGAAGTGACTGAATTAACGGAATAAAACACCATTGTAATA
GTCTGGCA