Detailed information on CNT30109481


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT004001, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30554224Oryza longistaminataOryza glaberrima97.3496.6695.361939forward
CNT30596399Oryza longistaminataOryza meridionalis92.6279.5990.461845forward
CNT30100733Oryza longistaminataOryza rufipogon92.0291.8894.931833forward
CNT30575011Oryza longistaminataOryza barthii94.5862.1494.161884forward

Expression of CNT30109481

Peptides detected in this lncRNA

>peptide 1 (32 aa)
RPPELLPSRPHLPFLSQATDKPGPRLLSSIGR*

>peptide 2 (34 aa)
MAAFANKTVASLLNQHVILFPGLLSTLSTHPCPL*

>peptide 3 (36 aa)
MPLWFGYVLSLRTDSFGKSIRTRYSATTRVLWDASG*

>peptide 4 (61 aa)
MGCLWLSKLLSHGSWCANGCGMPRMRRRSVTHLLPIMGVFLPLLWRGTSRSRRHPRYFLSG*

>peptide 5 (77 aa)
DLLSCCQAGPTSLSSLKPLTSRARAFFPPLAADSFVFVLRAQVRRSPGRRFRRRRPQPCARQASLITLPLYLQRYVV*

>peptide 6 (42 aa)
MCCCEKKLIEEQINCCSLIVTSCCKATCGMGRGVSLLPTTKT*

>peptide 7 (57 aa)
MRFSWVSFGKALSRTSGTGQYRCKFRVVWVKRATSAEINELFEQPCPRSRASVRCFS*

Sequence

>CNT30109481
AAGACCTCCTGAGCTGCTGCCAAGCCGGCCCCACCTCCCTTTCCTCTCTCAAGCCACTGACAAGCCGGGCCCGCGCCTTCTTTCCTCCATTGGCCGCTGA
CAGCTTTGTTTTCGTGTTAAGAGCCCAAGTTCGAAGAAGCCCCGGACGCCGCTTTCGAAGGAGAAGACCCCAACCCTGTGCAAGGCAAGCCTCTTTGATC
ACATTGCCCCTATATTTGCAAAGATATGTTGTTTGAAAAGTGCATTGCTTAGTTCACACGATTAACATGTTAGGCCTCGGATTGTTTATACGTCCGACGG
ACCAACCTAGTAGTCGCACTTATATTACATAGGTTGATGTTTCCATACCTTTGATAGCTCCACAAATGTTTGCGCCGGTATCGTTACACGATTACCGAGG
TAGTTTCGCTTAGCCATGCTTACGTTGTTGCCGTGTGGGAAACTTGGGTTATTCCAAATACATGTTTAAAAATCCGGTACGTTGTACCGAGGAGTTGTGA
AATAAAATGTGTTGTGAAAGTGGTGATGATGCGGAGTCATGCCTTTGTGGTTTGGCTACGTATTATCGTTAAGGACCGATTCCTTTGGGAAATCCATCCG
AACACGTTATAGTGCGACCACACGGGTATTATGGGATGCCTCTGGCTAAGTAAATTGTTATCACATGGGAGTTGGTGTGCCAATGGTTGTGGAATGCCGA
GGATGAGGAGACGAAGTGTTACACATTTATTGCCCATCATGGGTGTCTTTTTGCCTCTATTGTGGCGTGGTACCAGTAGGAGTAGGAGGCATCCTCGGTA
TTTCCTGAGTGGATGACGGCTGTTATTGCCTGATACTCGGCTATGGATCTTAGCCCAACTAGGTGGCATGCGATTTTCATGGGTTAGCTTTGGAAAGGCC
TTATCACGAACTTCCGGTACCGGCCAGTACCGGTGTAAGTTTCGTGTCGTGTGGGTAAAGCGTGCAACCTCTGCAGAGATTAATGAACTGTTCGAACAGC
CGTGCCCACGGTCAAGGGCGAGTGTAAGGTGTTTCTCATAGCGTAGATTTGTTTGACAAAGGTTTGTGGAAAAGTGGTTACTGAAAAGGGAGCGTTACCA
GAGTCCGCCTGTGTGGCAGACGGCTAACCTGGGTGGTTAGGAACGGGTCTGTGTGACCTGGGGTGTCGTCCGACACCGAGGTGTTGTTAGGGCCATGATG
ATGGCGTTGTTGTGCTGAGATAACTGTGTGGACTATGTGTTGTTGTGAGAAGAAACTAATAGAGGAACAAATTAATTGTTGTTCGTTAATCGTGACAAGT
TGTTGCAAAGCAACTTGTGGAATGGGTCGAGGCGTGAGCCTCCTCCCGACAACTAAAACTTGACTCACTCACTAGGAGTTTTGTGAAATAAATCATTTTG
CCAAAATGGCAGCTTTCGCAAATAAAACCGTAGCCTCCTTGTTAAACCAACATGTCATTCTTTTCCCCGGCTTGCTGAGTACGTTAAGTACTCACCCTTG
CCCCTTATAATAATCTATAGAGTTTGAAGACGAAGACGTCGACCCGACCGCCGAGGAGTATCTCCAGGAGCAAGCCGAGTATGAAGACTTCTAGATGTTT
CGTGCCTAGCCCCAAGCCTCGCCTGTGGAATAAGATAGATGCCTAGGTTCTTCGCCTAGTGCATAGTTGCTTAGTCGCTTAGTGCTCCGCGCTGTTCGCT
TCTGCGCCGTCGCTTTTATGGTTTTCTGTAATGTTGTGTTGCTCATCTATGGGCCTGTCCATGATAGCAACTTATGTAAGGACTACTACCCAGTGATGTA
ATAAAGCAGTTTACTTTGATTCCACATTTATTCTGTGTGTACCAGCTAGTGTATCCTGGGACTGGTACTATATCACAGGTAATGCATAACACCCCGGTGT
GATTTAGCTGTGTTAATGGCTAATGAATGTCGGGGCGTTACAAGCAATGTCAATAGGGAGGGAATCTCAATCCAAGGTGAATTAGAAGGTGG