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Detailed information on CNT30109402


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6ENJ0|PSBC_ORYNI, E-value = 1e-139

BLAST vs NONCODE:
NONORUT001181, E-value = 7e-128

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693553Oryza longistaminataOryza sativa5955.2299.36777forward
CNT30673559Oryza longistaminataSetaria viridis12.6858.894.01167reverse complement
CNT30730376Oryza longistaminataCorchorus capsularis16.2553.6389.25214forward
CNT30196209Oryza longistaminataPisum sativum26.8866.1788.98354forward
CNT30492211Oryza longistaminataOlea europaea9.6426.1984.25127reverse complement
CNT30188310Oryza longistaminataSecale cereale32.3553.7286.62426forward
CNT30300556Oryza longistaminataTriticum aestivum52.6240.5596.54693forward
CNT30220912Oryza longistaminataHordeum vulgare31.5179.286.99415forward
CNT30542882Oryza longistaminataBrassica napus50.6536.9589.51667forward
CNT30236148Oryza longistaminataBrassica oleracea32.3527.7388.73426forward
CNT30556052Oryza longistaminataOryza glaberrima18.9110099.6249reverse complement
CNT30441515Oryza longistaminataAegilops tauschii48.2998.9196.07636forward
CNT30628236Oryza longistaminataDaucus carota16.9320.5289.24223forward
CNT30361727Oryza longistaminataSorghum bicolor21.7994.4195.47287forward
CNT30369712Oryza longistaminataOryza glumipatula15.3483.47100202reverse complement
CNT30425595Oryza longistaminataPapaver somniferum43.8998.889.45578forward
CNT30148380Oryza longistaminataBrachypodium distachyon30.930.0197.05407forward
CNT30100129Oryza longistaminataOryza rufipogon4151.4399.44540forward
CNT30116897Oryza longistaminataOryza nivara22.3261.2598.98294forward
CNT30557406Oryza longistaminataPanicum hallii30.2294.3195.98398forward

Expression of CNT30109402

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MGHIFCRTSFLPRLYVFFQPTQVQTVGAP*

>peptide 2 (62 aa)
MSFFNLLKSKPLGPLRGSNHGARRSQKRIVSPPKITSPVGERIRYLPKPVGPWADPTLAPRR*

>peptide 3 (60 aa)
MAEWLIAPVLKTGIVLGTIEGSNPSLSFCFPLSFLLRIEYVCFFICFFCSVPLSFFHRKE*

>peptide 4 (57 aa)
MNPLILLFKTYYSPLFLFGYGVEGVLCFISQADIADPVYMDTVYRNISKRDLYLRCF*

>peptide 5 (45 aa)
MLYFTSRYSGSCIHGYSIQKYIEKGFVFEMFLEVSESFRMAMFYL*

Sequence

>CNT30109402
GTGAAAGNNNNNNNNNNAACAGCTAATTGGAAAGCAATAGTCATATTTCTAATCCTCCAAGTTACCATCAAATAAAGTTGACTACATATTATATTTGATC
CCTCACTTAATCAAAATTGTAATAAAATACAAGAAGTAGGAGGGGTTTAATCATGAATCCATTGATTCTTCTCTTTAAAACTTATTACTCACCACTTTTT
TTATTTGGATATGGGGTTGAGGGGGTTTTATGCTTTATTTCACAAGCAGATATAGCGGATCCTGTATACATGGATACAGTATACAGAAATATATCGAAAA
GGGATTTGTATTTGAGATGTTTCTAGAGGTTAGTGAGTCATTTCGTATGGCTATGTTCTATTTGTAGGAATAAAATAAGGATTAGGCTGTGGAGAGATGG
CTGAGTGGTTGATAGCTCCGGTCTTGAAAACCGGTATAGTTCTAGGAACTATCGAGGGTTCGAATCCCTCTCTCTCCTTTTGCTTTCCTCTCTCTTTTCT
TTTGCGTATTGAATACGTTTGTTTCTTTATTTGTTTTTTTTGTTCTGTCCCCTTATCTTTCTTTCATAGAAAGGAATGAATGGCTCGGCTAGATAGAATA
ACCGAGCCAGAACAGAAAAAAACAGTAGAACAGGTATAAATAAGAAAATCTTAGTTAAGAGGGGTCATGTAAAGAACAGGCTCCAAATCACGATCGATTC
CCTTTTCAAATCCTGCTGCAGCAGCCCGGGCTCTTCCTGCATGCCACAAATGGCCCACAAAAAAGAAGAATCCTAGAACAAAATGGGAAGTCGCTAACCA
ACTTCTAGGAGAAACATAATTAACTGCATTGATCTCGGTAGCTACGCCACCCACAGAATTTAAAGAGCCTAAAGGAGCATGGGTCATATATTCTGCCGAA
CGTCGTTCTTGCCAAGGTTGTATGTCTTTTTTCAACCTACTCAAGTCCAAACCGTTGGGGCCCCTTAGAGGTTCTAACCATGGAGCACGAAGGTCCCAAA
AACGCATAGTTTCCCCTCCAAAAATAACCTCTCCCGTTGGGGAACGCATTAGATATTTACCTAAACCTGTGGGTCCTTGGGCAGATCCCACATTAGCTCC
AAGACGCTGATCTCTAACTAGAAAAGTAAATGCTTGAGCTTGAGAAGCTTCTGGCCCAGTAGGTCCATAAAACTCACTCGGATAAGCTGTATTATTGAAC
CAGACAAAACAACAAGCGATAAAACCAAAGACAGATAAAGCACCTAAACTATAAGACAAGTAAGCTTCTCCAGACCATACAAATGCACGGCGAGCCCATG
CGAAGGGTTTGGTTAAG