« Back to Oryza longistaminata search


Detailed information on CNT30109401


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT005690, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696053Oryza longistaminataOryza sativa54.377096.88448forward
CNT30555231Oryza longistaminataOryza glaberrima54.4916.1395.1449reverse complement
CNT30595624Oryza longistaminataOryza meridionalis54.4961.1792.2449reverse complement
CNT30100709Oryza longistaminataOryza rufipogon43.6910096.67360forward
CNT30578145Oryza longistaminataOryza barthii54.3771.3496.21448forward
CNT30604093Oryza longistaminataOryza punctata26.0954.4393.95215forward
CNT30551432Oryza longistaminataOryza brachyantha21.488.8987.01177forward

Expression of CNT30109401

Peptides detected in this lncRNA

>peptide 1 (52 aa)
DVDCDCDRVSRTPFLSPTALLSFSASAPSISPHTAAARWKAASGSTVCCSRI*

>peptide 2 (73 aa)
MHGVDGDSIWHTMEVLCAYGMRSRIWKESKFGTIGYVKFLSCTSGFPKVFRTPSMSLVRGFRLPTSCINRGGA*

>peptide 3 (44 aa)
RRRLRLRPCLPDSISLPNCASLILRLGAFHLSSHGGGTMEGSKR*

>peptide 4 (30 aa)
MPRESICGDGPGVGLGIRRRPWWSEIMRDT*

>peptide 5 (32 aa)
MEIPYGIRWRYCVRMGCGVEFGRSPNLVRLVM*

>peptide 6 (34 aa)
MAYDGGIVCVWDAESNLEGVQIWYDWLCKVSFLY*

>peptide 7 (75 aa)
MLQPHLAIRFLSVRTTASPLRCLRVIAHAAKADGGSGVASARRSEAGRFSDLRRGAATGIGLRAGITCIKASSTV*

Sequence

>CNT30109401
CAGACGTAGATTGCGATTGCGACCGTGTCTCCCGGACTCCATTTCTCTCCCCAACTGCGCTTCTCTCATTCTCCGCCTCGGCGCCTTCCATCTCTCCTCA
CACGGCGGCGGCACGATGGAAGGCAGCAAGCGGTAGCACAGTATGTTGCAGCCGCATCTAGCCATCCGCTTCCTCTCTGTGAGAACAACCGCGAGTCCGT
TGCGCTGCCTTCGTGTGATTGCCCACGCGGCAAAGGCTGATGGGGGTAGCGGTGTAGCATCGGCGCGTCGCAGCGAAGCTGGCAGGTTCAGCGATCTACG
GCGTGGTGCAGCGACCGGCATTGGCCTGCGGGCTGGCATAACTTGCATTAAGGCAAGCTCCACGGTGTAAAATCAAAGGTGACTTGATGCCTCGGGAGAG
TATTTGCGGTGATGGACCGGGAGTCGGCTTGGGGATAAGACGACGTCCATGGTGGTCAGAGATCATGCGGGATACTTAGGCTAGAGTTGATGCACGGGGT
TGATGGAGATTCCATATGGCATACGATGGAGGTATTGTGTGCGTATGGGATGCGGAGTCGAATTTGGAAGGAGTCCAAATTTGGTACGATTGGTTATGTA
AAGTTTCTTTCTTGTACTAGTGGGTTTCCTAAGGTGTTTAGGACTCCTAGTATGAGTTTGGTTCGTGGCTTTAGGCTGCCTACCTCATGTATAAATAGAG
GGGGAGCGTGAGGCTTCCCGGTATCGCTTTAGAGAGCAATTGAGTTGAGTTTTGAGTTAGGGTTTCGAGTTTAGTCGAAATTTTTGTAAGGAGTGCTGTT
GGTGCACTTTGTAAACACAGAGAG