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Detailed information on CNT30109232


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT007156, E-value = 4e-91

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3099578Oryza longistaminataOryza rufipogon33.7418.3292250forward

Expression of CNT30109232

Peptides detected in this lncRNA

>peptide 1 (79 aa)
RRQRRPPRREDHVESGSVTARLLVLLFTIASSCISWSEIKPKPKIVHTSREFNPPHFQMSKYIQQILATPSCLYFNFPP*

>peptide 2 (30 aa)
AAPTPAAAARRSCGEWKCDGEAVSVVVYYS*

Sequence

>CNT30109232
GCGGCGCCAACGCCGGCCGCCGCGGCGAGAAGATCATGTGGAGAGTGGAAGTGTGACGGCGAGGCTGTTAGTGTTGTTGTTTACTATAGCTAGTAGCTGC
ATTTCTTGGAGTGAAATTAAACCAAAGCCCAAAATTGTTCATACCAGTAGAGAGTTTAATCCTCCTCATTTCCAAATGAGCAAGTATATTCAGCAAATAT
TAGCTACTCCTAGCTGCCTCTACTTCAATTTTCCACCGTGAAATCTGTAAATAGGAGCATAAATGTTCTTCACTCTCATCAGGCCACTCGTGTTTCCTCA
CTTTTATGGCCTCTGAGATGGATCTTTTATCCTCTGAATGCAGAAGTTTAGTGTAACCTTTTTTACTGAACACCTACGGATCCTCCTCTTGTAGGCCTTC
AGAAAAATCAGAGCTGTACTAAGAGCAAGTTCAATATTATAGTCAACTAATAGCTCCAATTCATCTATAGTCAATTTAATAGCTTATTCATACAATAGTT
ATATACTACACTATTAATATCTAGTCTCACCTGTCATTGACACACTGCGCCTTGGAGTCCGTGCTACAACTGGCTAAAGATCTGTAACCCGCTGCTCTTC
TCTCTCTTGATTTATCTTCTTAAAATATATTTGCAGCTGGCTTATAGCCTGCCATTGTACCTGCTCTAATTTGAGATCACCTGACCTTTCATGTTACTGC
AAATTTTCTTGGTTGTGGTGGCACTTGACAGATGATGCCTG