Detailed information on CNT30109228


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONOSAT000279, E-value = 1e-152

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30577609Oryza longistaminataOryza barthii36.677.3396.16781forward
CNT30115512Oryza longistaminataOryza nivara25.8215.9396.91551forward

Expression of CNT30109228

Peptides detected in this lncRNA

>peptide 1 (55 aa)
MYMQLMQLFVKNPSKCIPHQYATRYTFYVFVKLRNKLHRSTQSLNQEASHFSANE*

>peptide 2 (46 aa)
MMRIFFVASYEFRKNAWYYHHMIFFFQNYLYALCKVPTSEVFLSCR*

>peptide 3 (38 aa)
MCLLAACTGLGRGTLHGQNSVHDFFYFSVENPDASACS*

>peptide 4 (44 aa)
MRDEINEFLVSRSNLVVASIKIIWKEIMWEVFENQYHPVPYYLY*

>peptide 5 (35 aa)
SATAGFCGGDGDSSTERRGATVSTRSSSLLSPGLR*

>peptide 6 (38 aa)
MDQSNQTYTRQTLAATYFLKNKLCGINFLELSLMFLGK*

>peptide 7 (30 aa)
MASARLSSEAHRANQHHIWRFSHGFWDFII*

>peptide 8 (48 aa)
MRKTRDKKQMPQHEKKRYFGEDIIYKMYNNPLQERSRKKLKYSRCSIR*

Sequence

>CNT30109228
GTCGGCGACCGCTGGCTTCTGCGGTGGCGACGGTGACTCATCCACCGAGCGGAGAGGGGCGACGGTGAGCACAAGGTCTTCCTCGTTGTTGTCACCAGGC
TTGAGGTGAGATCTAGCGGGGGCGACGACAATGGCGAGCGCTAGGCTGAGTAGTGAAGCGCATCGTGCAAACCAGCACCACATTTGGAGATTTTCACACG
GATTTTGGGATTTTATCATATGACCTAGAGATAAGTTTTCTGTAAATGCGTTCCGTGAATGCTTCTGTGCAATTATGTGTGATTCTCTAGTGCAAAAAAT
TAGGATGTGGATGTCATGGTGTTGGAATTCGACCCAAATTAGTACTTTGCTTAAAAATTAGTAGGGATTACCTTTGTGCTATGTTGGTGTTAATTTAGTA
TGTGTTTACTTGCTGCATGCACAGGATTAGGTCGAGGAACCTTGCATGGTCAAAATTCTGTCCATGATTTTTTTTATTTTAGTGTCGAGAACCCTGATGC
CAGTGCTTGTAGTTAGTTGTTTATAGAGCACCATGGACAGAAGGTTTGCTTGGGTTAGGGGGAATGGATGTACTTATAGGTCACTGGTTTTAGAGTAGAT
GTTTTTATAGGGCGAATGCAATTGATGTGCTTAACTTCAGATTCCATCAGGAAGATACTAGAAAACTATTTTTCTATGACGTAATTTTGCTTACTGTAGA
AGTAACTTTAGGTGTAAGTGGTTGTTAACTTTTAGGTGTAAATGATGAGGATTTTTTTTGTTGCAAGCTATGAGTTCAGAAAAAATGCTTGGTATTACCA
TCACATGATCTTTTTTTTCCAGAACTATTTGTATGCTTTATGCAAGGTTCCAACTTCTGAAGTTTTTTTGTCATGCCGATAGACACACCTAGCTGAACAT
GTAGCATTATGGGGTCAAATGACCGATACTAAACTAAGTAGGAGTTAGTTAAATTTATGTGCTGACAGTAGTAATTATTTTGTTTTTTTATTTAATTTGT
TGATTTTTTTCTTTTCCTAACTGTATATAAATTTAGGATACACGGAACGAAGAACTTGGCACATAAAGGGACGATGGGCACATGGCGGAGGTGGAACAAG
CAAAACAATAGGGAATGAGGAACCGCAGTTCATGAGGAAAACCAGGGACAAGAAGCAAATGCCACAACATGAGAAGAAAAGATATTTTGGAGAAGATATC
ATCTACAAAATGTACAACAACCCACTCCAAGAAAGGTCTAGAAAGAAGCTGAAATATTCAAGGTGCTCGATTCGATGAGGGATGAGATCAATGAATTTCT
AGTATCAAGAAGTAATCTGGTAGTCGCATCCATCAAGATTATATGGAAAGAGATTATGTGGGAAGTCTTTGAGAATCAGTATCATCCGGTGCCCTATTAT
CTCTACTAATGGACCAAAGCAACCAAACATATACACGACAGACACTTGCTGCTACATATTTTTTAAAAAACAAATTATGTGGAATTAACTTTCTGGAACT
AAGTTTAATGTTTTTGGGGAAGTGACTTTCGTGTTGAAGGAAGTAACTTTCTTGCTTGTAGAAAGTAACTTTTACTTCTAGAGAATGTATATGCAGCTGA
TGCAACTTTTTGTTAAGAATCCATCAAAATGCATACCACATCAGTATGCAACTAGATATACATTTTATGTTTTTGTCAAGCTAAGAAATAAACTGCATAG
AAGTACGCAAAGTCTAAATCAAGAGGCATCTCATTTTAGTGCTAATGAGTGACGCCAGATGTTGTCCGAATATGTGTTAATCTATAGTACTTGTCTGTCA
GATATAGTACTTTTCATGGATTAGCTTTGGAAAGGCCTTATCATGAACTTCCGTTACCGACGGGTAAACGATGTCAGCTTCGTGTCGTGTGGGTAAAGCA
TGCAATCTCTGTAGAGATTAATGAACTATTCGAACAGCCGTGCCCATGGTCAAGGGCGAGTGTAAGGTGTTTCTCATAGCGTAGATTTGTTTGACAAAGG
TTTGTGGAAAAGTGGTTATTGGGAAGGGTAACGTTTCCAAAGTCAGCCTGTGTGGCAGACGGCTAACCTTTGTGGTTAGGAACGGGTTTGTGTGACCTGG
GGTGTCAACCGACACCGAGGTGTTGTTAGGGCCG