Detailed information on CNT30109162


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONOSAT001125, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694650Oryza longistaminataOryza sativa79.2674.8996.651372forward
CNT30596363Oryza longistaminataOryza meridionalis58.3599.5196.041010reverse complement
CNT30371142Oryza longistaminataOryza glumipatula70.1390.1396.621214forward
CNT30102110Oryza longistaminataOryza rufipogon74.4162.2596.271288forward
CNT30576376Oryza longistaminataOryza barthii67.7144.0396.51172reverse complement
CNT30115711Oryza longistaminataOryza nivara79.8458.8688.131382forward

Expression of CNT30109162

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MVFRESDNQVAYLGFICVGARQVIIPPLKIITLYSISLFYALAIHDFECIT*

>peptide 2 (37 aa)
MFSTKKTEWRSSTVLHYSLTCGSHKSRNAALTKFLIG*

>peptide 3 (86 aa)
PQTSPPFVHRRAGAHSLPLLCSRQEKEEERKKMTGERRRRRKRKRKTDSKVYCLLDGNLWYFENRIIRLPISDLFALEQGKLLFLP*

>peptide 4 (62 aa)
MGTDLDIMLINNVVPLYSGSYVSPREGGKYMPRRANVIFTEAQVNILIIARCVCEFMKTWLR*

>peptide 5 (32 aa)
RKRRRLSSTGEPAPTLSLSSVAGKKKKKRGRR*

>peptide 6 (35 aa)
MTKLMIIGKSWTAGKAYIYCSMNILESIRIAVLTD*

Sequence

>CNT30109162
GCCGCAAACGTCGCCGCCTTTCGTCCACCGGAGAGCCGGCGCCCACTCTCTCCCTCTCCTCTGTAGCCGGCAAGAAAAAGAAGAAGAGAGGAAGAAGATG
ACGGGAGAAAGAAGAAGGAGAAGAAAAAGAAAAAGAAAGACTGACAGTAAAGTCTATTGTCTTTTGGATGGCAACCTATGGTATTTCGAGAATCGGATAA
TCAGGTTGCCTATCTCGGATTTATTTGCGTTGGAGCAAGGCAAGTTATTATTCCTCCCTTGAAGATAATTACCCTATATTCTATATCTCTATTCTATGCA
TTAGCCATTCATGATTTTGAATGCATAACCTGAACATATAGCAAACCAGTTATATGCTAGCTTTTGCTTAGCCCTGCCTAGTTAGATTGCATAAAATATA
ATGAACTTAGATTGGGACAGTACGTAAGATTTGGTTGATTTCCGGGTGGCTAGTACTGTCTCGGTCGATATAAGTTTACCAAGTACTTATGTCAAACGAA
CGAGTACGACCGCAGCTTCTAGAATGGGGACAGACCTAGATATTATGTTAATTAACAATGTGGTACCTCTGTACAGTGGTTCTTATGTAAGTCCTCGCGA
AGGAGGCAAATATATGCCGCGAAGGGCAAATGTGATATTTACCGAGGCGCAGGTAAATATCTTGATTATCGCGCGATGTGTGTGTGAATTTATGAAAACC
TGGTTGAGATGACGTGGGGTCTCTCATCCAGTTCTCTCTAAAAACCCCGGGAACGCCAGAACTCCTCTCGCTGCTGATAACGTCACATTCAGAGCGCATG
GGGACAAGAGTTCATGGAACAGGTGCCACAATTGTTAATAACCTAATACTGGGCCATGACTAAGCTAATGATTATTGGCAAGTCGTGGACTGCGGGTAAA
GCGTACATCTACTGCAGTATGAATATCCTTGAATCTATTCGAATAGCCGTGCTCACGGATTGAGCATCGGGACTCATATGGTACTTTGGTTAGAAATATA
ATTCAAGATTTTCTTAAATACTGTTGCATATCAAGCATTTCAGGATTTCTACCTCTTTATTCTCAGCCTTCTGCAAGTAAATCTAGCTCTACACGGATAT
TACCTCTCATGCATTCATTGTTGAATAATATAATAGCTTGCTGAGTACGTTGTACTCACCCTTGCTTCAACCCCTCTTTTTCAGAGTTTATTTGGAGTTT
TTGCCAAAGCTGGGAGTTCAATCACATAAGTTAGTTCCCTTTAAACCTAGTCTTCAAGTCTAGTATAGTTAGATGGTTTAATTCTATAGTAAAACGGCAG
AGTTGAGTCATCGTATAGCTTCTGCTGTAATAGTTAGCCACAAACTTGTAAATGTCCTATTATTTTATATAAAGACATCTCCTTTGGAGTCTTAACCAAA
TGTATGCGATGAAGATCCAGATTGTTGAACCTGTATCAATCTACTGATCCAGGGCTTGATACAGTTAAACATGTCGGTTTCTGAATCGTTAGTTTTGGGA
TCCGACAATGTTTAGTACCAAAAAGACCGAGTGGAGATCTTCTACAGTACTGCACTACTCACTGACATGTGGGTCCCATAAATCGAGGAATGCTGCACTC
ACTAAGTTCTTGATCGGTTAATCCCCGTGAGGGAGGGACTAAAGGAGATTTATTCAACACCTATTATGGTGTGAAATTATTCCCTCTTAATCTCTTCCAA
TCCTTTTCAATTCCCTCCAAACCGAACCAGC