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Detailed information on CNT30109152


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30597069Oryza longistaminataOryza meridionalis81.4139.1886.73784reverse complement
CNT30101810Oryza longistaminataOryza rufipogon97.8237.1687.9942reverse complement
CNT30116854Oryza longistaminataOryza nivara97.7238.2787.99941reverse complement

Expression of CNT30109152

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MRLISCCACFMIYFVCLCGKITCKRVTTKS*

>peptide 2 (29 aa)
MEKKLIGATSKLNMPRRIDMVLLLFYALD*

>peptide 3 (32 aa)
DGVSLVGFLCCKFYFCHAYLLLWMEMEREEVG*

>peptide 4 (30 aa)
MGFLWLDFCVVSFIFVMLTYYYGWRWREKK*

Sequence

>CNT30109152
TAGATGGGGTTTCTTTGGTTGGATTTCTGTGTTGTAAGTTTTATTTTTGTCATGCTTACTTATTATTATGGATGGAGATGGAGAGAGAAGAAGTAGGATG
ACTTCCTTTGAGAGTTGAGACGTTTAATACCTTGATGCTTATCAAACGGCTTGCTGATAAAATAACATGCTAGAGTACTGGTTTTAGTGCTAGTATGTGT
CTTTGGCTGTCAGCTCGTTAGACTGTTATGCGGTAGATTCCAGTCTTCCCCTTGGTCTCGGGACTTGGAATTCTTATAAAAGAACGGAAAATGGAAAAAA
AATTGATTGGTGCCACTTCAAAGTTAAATATGCCAAGACGAATTGATATGGTTCTGCTGTTGTTTTATGCGCTTGATTAGTTGCTGCGCATGTTTTATGA
TTTATTTTGTTTGTCTTTGTGGAAAGATTACATGTAAAAGAGTAACCACTAAAAGCTAGCCAGCGATTTCGCTCTTTAATTCCAGGTCTCCAGGATATGT
TTACCCCTAAAAGTGGTATATATTTATGTGATATTTACAATACATAGTGGCACCACGATTGATTATGCGGTTATGCTGATTCCCGTGGAAACTTGATAGA
TTCCTTGTGCTCTATGCCTACTTGTTGCACTTATAGAGAATGTTACAAATACCTATAGGAAATTAATCAACTCTTTGTAGGGACAACTTTTTTAGCCCAA
AATCGTGGTCTTGTCAGGTGCCAACAAAACAGCATCTTGCTGTACATAAGCTATATATATAGAGGATTAAAGGGAAAGTTTGTTCTCTGCTACTTTTTTT
AACCTGTTTACTGCATGGAAGAACAGGAAAAATTTTGTTGCATAAACCATTTGTTCTAGGGATCTGTAATGTCCTCTCAGTGTGTTACGCAAACATTTCC
AGAAATGAATTGTTGCTTCGGCTTCCAACGAGTAGCTTCACATTAGCTATCACTAATACCCCT