Detailed information on CNT30109132


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697340Oryza longistaminataOryza sativa17.4324.6596.43140forward
CNT30371466Oryza longistaminataOryza glumipatula17.3135.6494.96139reverse complement
CNT30578398Oryza longistaminataOryza barthii16.8122.4697.78135forward

Expression of CNT30109132

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MEWFCTNASFVRTKPANGLDGNGLIGLDCNLGCV*

>peptide 2 (40 aa)
RSSTRIAATRINPYAVPVMSRHLRTAASIRRFLLQLVPLR*

>peptide 3 (71 aa)
MFLENEVSMAGRLDFNDVHSDAESVTAGIPNRRDQYATPQKSTSIPFCGSYFIPDCDDSMVPNIGMTFNGL*

>peptide 4 (50 aa)
MMYIPMQSRLRQGFQIDAINTPRLKSPQASHSVVRILFQTVMILWCQTSV*

>peptide 5 (49 aa)
MPSTLTIADELELLCCWCSCRDSYSFLLLLFFPLLAPSPSSVGHTKGCS*

>peptide 6 (42 aa)
PQFHTNRGNTNQPLCCSGDVEASTNSGLDSSIPPPACSIEIN*

Sequence

>CNT30109132
CCGCAGTTCCACACGAATCGCGGCAACACGAATCAACCCCTATGCTGTTCCGGTGATGTCGAGGCATCTACGAACAGCGGCCTCGATTCGTCGATTCCTC
CTCCAGCTTGTTCCATTGAGATAAACTAGGGTTTTGATGCCGTCAACACTCACAATTGCAGATGAACTAGAGTTACTATGCTGCTGGTGTTCTTGTAGAG
ACAGCTACAGCTTCCTCCTCCTCTTATTCTTCCCTCTACTTGCGCCTAGCCCCTCATCGGTTGGCCACACAAAAGGATGTTCTTAGAGAATGAAGTGAGC
ATGGCAGGGAGATTGGACTTCAATGATGTACATTCCGATGCAGAGTCGGTTACGGCAGGGATTCCAAATCGACGCGATCAATACGCCACGCCTCAAAAGT
CCACAAGCATCCCATTCTGTGGTTCGTATTTTATTCCAGACTGTGATGATTCTATGGTGCCAAACATCGGTATGACTTTTAATGGTTTATAGTCGGCTAA
GGAGTTTTATGAAAGCTATGCACATAGAGTTGGTTTCTCAGTTCGCATCGGACAGCACAAGATAGTTAATGGAGTGGTTCTGTACAAACGCTTCCTTTGT
GCGAACCAAGCCTGCTAATGGATTGGATGGAAATGGATTAATTGGGTTGGATTGTAATTTGGGCTGTGTTTAGTTCAGCGCAAAGTTTGGATTTTGGTTG
AAATTGGAGATGATGTGACTGAAAAGTTGTGTGTGTATGACAGGTTGATGTGATGGAAAAGTACTGAAGTTTGGATCCAAACTTTGGATCTAAACACAGC
CTT