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Detailed information on CNT30109128


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552538Oryza longistaminataOryza glaberrima56.2415.1693.49338forward
CNT30595789Oryza longistaminataOryza meridionalis68.2220.7294.88410forward
CNT30100105Oryza longistaminataOryza rufipogon31.453.6693.12189forward

Expression of CNT30109128

Peptides detected in this lncRNA

>peptide 1 (32 aa)
PAGRRHACRPSWCSYHRMPQLSRLECSLHQLN*

>peptide 2 (30 aa)
GRSPACMPSVLVLLSSYAPALKIGMFVASA*

>peptide 3 (37 aa)
MFPCQRESTYKPAGSSILLDACALISCHWIIYKRKKS*

>peptide 4 (40 aa)
MYKIDGRYFCQCCNLIWNFLWLIFIMYKCLEVITIYPDIYA

>peptide 5 (63 aa)
RPVAGMHAVRPGALIIVCPSSQDWNVRCISLIRGGDGKKKEISLRSANYSFHLTTHQIDQGFE*

Sequence

>CNT30109128
CCGGCCGGTCGCCGGCATGCATGCCGTCCGTCCTGGTGCTCTTATCATCGTATGCCCCAGCTCTCAAGATTGGAATGTTCGTTGCATCAGCTTAATTAGA
GGAGGGGACGGGAAGAAGAAAGAAATTTCCCTCAGATCTGCTAATTACTCCTTCCATCTCACTACTCACCAGATCGATCAGGGCTTCGAGTGAGCCACAA
GACGTAATTAAACCGACACTGACGACCACTTTCCTGTTACCGCTTGATGTTTCCTTGTCAGAGGGAAAGCACGTATAAACCAGCTGGATCGAGCATCCTG
TTGGATGCGTGCGCATTAATTTCATGCCATTGGATTATATATAAAAGAAAAAAGTCATGATGTATCAAGCATCTCATAGGAATTAGTTCAACTGGGAAAG
AAATACTGTACTCCAGGTAGCTATATTTCTATATACCACATATGTACATGGAGACCAAATTTAGATGTAAAGTTATCTATGTATAAAATAGATGGGCGCT
ATTTCTGTCAGTGTTGCAATCTTATTTGGAATTTTCTATGGCTAATTTTCATCATGTATAAATGTTTGGAGGTGATCACTATATATCCAGATATATATGC
A