« Back to Oryza longistaminata search


Detailed information on CNT30109108


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8W3M4|Y4744_ARATH, E-value = 4e-25

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690966Oryza longistaminataOryza sativa19.9322.7691.45117forward
CNT30369729Oryza longistaminataOryza glumipatula19.9323.4993.16117forward
CNT30149732Oryza longistaminataBrachypodium distachyon19.9324.6387.18117forward

Expression of CNT30109108

Peptides detected in this lncRNA

>peptide 1 (38 aa)
GRQPESWLFRRSTSRRESCKCEIDAGIGPVSLFLATAR*

>peptide 2 (55 aa)
MAGPGRGNIHGIACNSVLEALDNEICLVKPLVWEIVRMWIIEGNMLMVGLVGWLW*

>peptide 3 (29 aa)
MSWPVQVEVIFMGSHVIVFLKRWITKYAW*

>peptide 4 (29 aa)
GGSRRAGCSGGAPRGGSLASARLMRGLAR*

>peptide 5 (30 aa)
MKPCSFGAHKPKPSRMADVTVRPCPGSVVQ*

Sequence

>CNT30109108
GGGAGGCAGCCGGAGAGCTGGTTGTTCAGGAGGAGCACCTCGAGGAGGGAGTCTTGCAAGTGCGAGATTGATGCGGGGATTGGCCCGGTGAGCTTGTTTT
TGGCGACGGCGAGGTAGGTGAGTCCAGCAAGGTTGGGTACGTCGAATGCACCGAATTTGTTGGAGGCAGACTGGACGAGGGCAAGATCTGGGAGTTGATC
TATGAAGCCTTGCAGCTTTGGCGCGCACAAGCCAAAGCCATCGAGAATGGCGGATGTGACTGTGAGACCGTGCCCAGGCAGTGTTGTGCAGTAGAAGCCA
ACGTAGCTCGAATTGCCACATATGTCATGGCCGGTCCAGGTCGAGGTAATATTCATGGGATCGCATGTAATAGTGTTCTTGAAGCGTTGGATAACGAAAT
ATGCTTGGTAAAGCCTCTCGTTTGGGAAATCGTGCGGATGTGGATAATCGAAGGTAATATGCTGATGGTTGGTCTTGTAGGATGGTTGTGGTAGAGTAGT
TGTTGCTGCTACAACCGCAGCAGTGTAACAGAATAGGAAGAAGAGATTTCNNNNNNNNNNCTTAGGACCGGCCATGTTCGGTTCTAT