Detailed information on CNT30108963


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690744Oryza longistaminataOryza sativa98.2550.4599.01506forward
CNT30554827Oryza longistaminataOryza glaberrima47.7742.0590.24246forward
CNT30101890Oryza longistaminataOryza rufipogon47.7727.8992.28246forward
CNT30576446Oryza longistaminataOryza barthii51.4623.3792.08265forward

Expression of CNT30108963

Peptides detected in this lncRNA

>peptide 1 (49 aa)
SCMARRGSDATAMATARSLFRQLSPPVATFSPALGGRKSERMVVHILSG*

>peptide 2 (39 aa)
QLHGAARLRRDSDGDGTLSFPAVVSSGGHLLPGFGRKEV*

>peptide 3 (46 aa)
AAWRGAAPTRQRWRRHALFSGSCLLRWPPSPRLWEEGSLRGWWFIY*

>peptide 4 (49 aa)
MSRHVHDVGFLQEQQMLIFESLYIADVTIWPGSPGVAAHIYFYSLTIIS*

Sequence

>CNT30108963
CAGCTGCATGGCGCGGCGCGGCTCCGACGCGACAGCGATGGCGACGGCACGCTCTCTTTTCCGGCAGTTGTCTCCTCCGGTGGCCACCTTCTCCCCGGCT
TTGGGAGGAAGGAAGTCTGAGAGGATGGTGGTTCATATACTGAGTGGATGAGCAGACATGTACACGATGTTGGCTTTTTGCAGGAGCAACAAATGTTGAT
CTTTGAATCTTTGTATATTGCTGATGTAACCATTTGGCCTGGGAGTCCTGGTGTGGCAGCTCACATTTATTTTTATAGCTTGACAATTATCTCCTAGCTA
ATTATCTCAAGTGAATCATGACATAGTTTTATCTTTTTTCTTTTTTATTGTCAAATTTCACTACTAAGACTGTATTTAGTTGTCTCCGTATTGTCAAGTG
GCCTCAAGCTTTGTTGGGTGATGCCTCCTTGCCTTAAACCGAATACAGGTCTTGATGATACTGCAATATTTTTGTTTTAATGATTAATCAATGTGGTTTT
CATGTAATTGATGAG