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Detailed information on CNT30108937


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30370038Oryza longistaminataOryza glumipatula16.2725.784.08157forward
CNT30101395Oryza longistaminataOryza rufipogon16.2727.2684.08157forward
CNT30576050Oryza longistaminataOryza barthii16.2722.4984.08157forward

Expression of CNT30108937

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MCFFCAEQNRQSLGYAGLLLSNKNINSREPICLFKQFKSASAG

>peptide 2 (42 aa)
LVVPMASREVAMSLLTVVSEVPMEQAATDILSPVCEMAKVFQ*

Sequence

>CNT30108937
TTGGTTGTTCCCATGGCATCCCGGGAGGTAGCCATGTCTCTTCTTACTGTCGTCAGTGAGGTGCCCATGGAGCAGGCAGCCACGGATATTCTGTCTCCGG
TGTGTGAGATGGCCAAGGTATTTCAGTAGGATCACATTGCTGGAGCTCCTGTTCCTTGACGAACAATGAACACCAAGGCCACAACAATCTCCAAGATCTT
TCTTATCACCTGAAACCCAAACATATCTCTCCGGGATGGGGTGGCGAGTGGTGACATCTGCTTGGCCTCCTCTAGCCATAGTTTGGTGCATAAGGGCAGT
AAAAACACCAGGTGCTTGACCAGAAAACATACCAAAAACAAGAATTCGTGCCGATAAAGCAGGGCAGCGGTAACCGATGGCAAGCCCTGCAGCGGCGGAG
GTGGAGCAAAAGAAGAGATAAGTAAGGAAATAATGCTCGGAAGCCTACTAGAGGACCCACGATTGGGCAAATAAGCCTTGGACAGAGAGGCGTGCGATTG
GGCGAAGCGCTTGCAGCGTGTGGGGCAGTGGGAGATGACTTCGAAGTTTGCTTTAGAAAATAAAAGAATGTACCACATCTGAGCTGACCATTGCTAATGC
TCTGAACAAAAGACGCCGAAGGCTAAAGACGATTGTCGGAAGAGGACACTGCGGACTGGCGTTGCGAGATCGATTGGAGCAGCCAGTAGACTGCTATCAG
CAAGCCTATCAGAATGAGGGAAGAACTAAAGAAGTATAAAGAGGCTGACAAGCTTAGTAGTTAGTTCAGTAGGTTAATTTCTGTAATTTCGTAGATGTTT
GGGCTGCCTCTTTTTCAAGCCGATGATTGCATTTGATGTGCTTTTTTTGTGCTGAACAAAACAGGCAAAGCCTAGGTTATGCTGGGCTCCTTTTAAGCAA
CAAAAACATCAACAGCAGAGAGCCCATTTGTCTTTTTAAGCAATTTAAAAGTGCTTCAGCTGGCC