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Detailed information on CNT30108930


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONCQUT002726, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696398Oryza longistaminataOryza sativa18.2988.9898.83428forward
CNT30524649Oryza longistaminataSetaria italica60.1342.6999.861407forward
CNT30641383Oryza longistaminataNymphaea colorata20.3415.2495.8476forward
CNT30550219Oryza longistaminataIpomoea triloba37.1420.0197.81869forward
CNT30619000Oryza longistaminataSesamum indicum37.1428.4595.17869forward
CNT30730481Oryza longistaminataCorchorus capsularis41.7979.5196.32978reverse complement
CNT30632407Oryza longistaminataVigna unguiculata37.3932.496.57875reverse complement
CNT30490123Oryza longistaminataOlea europaea22.4830.2197.15526forward
CNT30505430Oryza longistaminataNicotiana attenuata37.1437.0397.7869forward
CNT30712870Oryza longistaminataGlycine max18.526.0595.61433forward
CNT30157603Oryza longistaminataPistacia vera31.8478.0990.6745forward
CNT3092080Oryza longistaminataSolanum tuberosum11.9748.0395280forward
CNT30185187Oryza longistaminataSecale cereale70.5646.6898.551651forward
CNT30292784Oryza longistaminataTriticum aestivum74.4458.1198.281742forward
CNT30223648Oryza longistaminataHordeum vulgare74.2773.1895.171738forward
CNT30387090Oryza longistaminataTriticum turgidum74.4461.998.681742forward
CNT30569655Oryza longistaminataActinidia chinensis29.3619.2995.34687forward
CNT30592527Oryza longistaminataMusa acuminata8.0856.5998.41189forward
CNT30543268Oryza longistaminataBrassica napus48.4249.3795.941133forward
CNT30511493Oryza longistaminataSolanum lycopersicum12.9533.8997.03303reverse complement
CNT30147391Oryza longistaminataMedicago truncatula37.1434.3596.66869reverse complement
CNT30435868Oryza longistaminataAegilops tauschii59.5710099.281394forward
CNT30242786Oryza longistaminataAvena sativa37.05100.1299.54867forward
CNT30670388Oryza longistaminataTriticum dicoccoides66.8455.7898.591564forward
CNT3082633Oryza longistaminataBrassica juncea13.596.0595.57316forward
CNT30140120Oryza longistaminataLolium perenne74.3252.3699.831739forward
CNT3017956Oryza longistaminataZea mays67.7444.9498.611585forward
CNT30605266Oryza longistaminataGossypium raimondii20.4722.8996.45479forward
CNT30216578Oryza longistaminataKalanchoe fedtschenkoi37.3126.2197.59873forward
CNT30655407Oryza longistaminataRosa chinensis48.9734.2895.111146forward
CNT30207637Oryza longistaminataHelianthus annuus37.1444.4396.32869forward
CNT30628241Oryza longistaminataDaucus carota37.1432.1997.47869reverse complement
CNT30689137Oryza longistaminataTriticum urartu43.5984.7998.631020forward
CNT30721631Oryza longistaminataTriticum spelta67.5645.5298.921581forward
CNT30364089Oryza longistaminataSorghum bicolor15.9482.1693.3373forward
CNT30595572Oryza longistaminataOryza meridionalis11.6231.7497.43272forward
CNT30360996Oryza longistaminataLactuca sativa37.1459.5697.58869forward
CNT30434643Oryza longistaminataPapaver somniferum32.14101.0893.35752forward
CNT30571858Oryza longistaminataVitis vinifera37.1425.0797.81869reverse complement
CNT3057903Oryza longistaminataAmborella trichopoda48.5947.4591.911137reverse complement
CNT3038420Oryza longistaminataCucumis melo28.8947.3497.19676forward
CNT30331546Oryza longistaminataDioscorea rotundata17.8210094.96417reverse complement
CNT3099908Oryza longistaminataOryza rufipogon11.71100100274forward
CNT30499372Oryza longistaminataDigitaria exilis66.4145.721001554forward
CNT30603680Oryza longistaminataOryza punctata75.9451001776forward
CNT30550626Oryza longistaminataOryza brachyantha12.91103.0791.72302reverse complement
CNT30113381Oryza longistaminataFicus carica8.5544.8497200reverse complement
CNT30725732Oryza longistaminataLupinus angustifolius10.3453.6695.45242forward

Expression of CNT30108930

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MTTRRWAWKQPSFEESVIAHWSSSMAPKMSQGSSDSPKRRDLESCFFKCQ*

>peptide 2 (54 aa)
MHWMDARALRRKDAFRGERPWGERASVIHGSPIGKPYPSSVASLRSLDFSNLAN*

>peptide 3 (33 aa)
MMSMARGRALNGLGWPPFRFTNPRETPNTGRHP*

>peptide 4 (29 aa)
MRFSNKALIPCSFALVAQSVACFSSVLEK*

>peptide 5 (49 aa)
MFDAIENHALDGCPGIEKEGRFQRRKAMGRESVCDPWISDRETVSKLRG*

>peptide 6 (45 aa)
FIQRENILKKKPKEREVKQSRENRVLPVISYQKALFSRSDSITVP*

>peptide 7 (45 aa)
MMEKPASSKRRLCCRSAPYGVVQSQQPFWGASIGNTGLMTGWGAQ*

>peptide 8 (45 aa)
MSNEKSCEKHDRLPVEGFLRSVNLRRVNRSLRNPRKGCRPMGTRK*

Sequence

>CNT30108930
CTTCATCCAACGTGAAAATATTCTCAAGAAGAAGCCAAAAGAAAGAGAGGTGAAACAGAGTAGAGAGAATCGGGTGCTTCCAGTGATTAGTTATCAGAAA
GCACTGTTTTCCAGATCGGATTCGATCACAGTCCCATAAGCAGTAGGGACCACGAGTGAGCATGAGCCTATTTCGTGATCGGCTAGTTGCTCAAAAAATC
GTATAAAAATCAAGCAAGAAAACGTATGCGCTTTAGCAACAAAGCGCTCATCCCTTGTTCTTTCGCGCTAGTTGCTCAATCCGTTGCTTGCTTCTCTTCT
GTCTTGGAAAAGTGAGGATTTCCTATCTGATCCAAGGGAAGGAAGAGAGGTGGAAAGTGTTGCTGTGTCAAATCGAGATTGTGTGGGTGTTCAGTCTACC
GCTCATGTTCGACGCTATCGAAAATCATGCATTGGATGGATGCCCGGGCATTGAGAAGGAAGGACGCTTTCAGAGGCGAAAGGCCATGGGGAGAGAGAGC
GTCTGTGATCCATGGATCTCCGATCGGGAAACCGTATCCAAGCTCCGTGGCTAGTCTGCGCTCTTTGGACTTTTCAAACTTAGCGAACTGAAACATCTGA
GTAGCTAAAGGAAGGAAAATCAACCGAGACCCCGTTAGTAGCGGCGAGCGAGAGCGGAACAAGGGTTTTCATCAAAAGAAATCCGAAGCGGTTTCATTCG
ATTTGTTGTGGATTGGATGATGGAAAAACCAGCAAGCAGCAAGCGTAGGCTGTGTTGCCGTAGCGCGCCCTACGGAGTTGTACAAAGTCAGCAACCGTTT
TGGGGCGCAAGCATAGGCAACACAGGACTGATGACGGGGTGGGGCGCGCAGTGAACTGGTTTTCTAAAAAGATTGGAAGATCCGGCCAAAGAAGGTGATA
GCCCTGTTCATTCGTTCCCATGGTTCGATCCTTCCCAGTAAAACGCGGCGTGTTCGAATGATGATCGCTTTTACGCGAGAAAGGGGGACCACCCTCTAAG
CCTAAGTATTCCTCAATGACCGATAGCGTACAAGTACCGTGAGGGAAAGGTGAAAAGAACCCCAATCGGGGAGTGCAATAGAGAACCTGAGATCCGATGC
GAACAATCAGTCGAAGGAGCGGAGCGCGGGCGCACTCACTCTAACGGCGTACCTTTCGCATGATGGGTCAGCGAGGAAATGGGAACAGCGGCTTAAGCCA
TTAGGTGTAGGCGCTTTCCAGAGGTGGAAGATTTACGTTCTTCCTATTTGACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACA
GGCCTTGGAGGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCCAACCAAGATCGGATATAGCTGGTTTTCCGCG
AAATCTATTTCAGTAGAGCGTATGATGTCGATGGCCCGAGGTAGAGCACTCAATGGGCTAGGGTGGCCCCCATTTCGCTTTACCAACCCCAGGGAAACTC
CGAATACAGGCCGTCATCCTTAGTACAGACAGACTGATTGGGTGCTAAGATCCAAAGTCGAGAGGGAAACAGCCCAGATCGTACGCTAAGGTCCCTAAGC
AATCACTTAGTGGAAAAGGAAGTGATCGAGCGATGACAACCAGGAGGTGGGCTTGGAAGCAGCCATCCTTTGAAGAAAGCGTAATAGCTCACTGGTCTAG
CTCCATGGCACCGAAAATGTCTCAGGGCTCAAGTGATTCACCGAAGCGACGAGACCTTGAAAGCTGCTTTTTCAAGTGTCAGTAGCGGGACGTTCTGTCA
ATCGGGGAAGGTTTTTGGTGACAAGACCTGGAGATATCAGAAGTGAGAATGCTGACATGAGTAACGAGAAATCCTGTGAAAAACACGATCGCCTGCCAGT
GGAAGGCTTTCTGCGTTCAGTCAATCTACGCAGAGTGAATCGGTCCCTAAGGAACCCCCGAAAGGGCTGCCGTCCGATGGGTACACGAAAGTGACGAATG
TGCTAAAGGCTGCGGAATAAGAGCTCTTAGTCCTTTCGGCGTAGAGAACAAATCCTCTGTTGGAATTAGATAATTATTATGTATGGGACCCGAGTAATTT
TTGTTCTAGGTTCACCGCTATAGAAACTGGTATGCACAAAAACAAATAGCCCTGACACACGTTCTTTACTATTCCATGCCAAGAGCACTCAATTTCTGTT
TAGTATGAATCTGTATCTCAAGTTTTTTTTTCTTGGAAAAATCGCAAACAAAAAATAAATCAGAGAGACAGTTCATACAGTCATGGCTCTGCAGAGAGCT
CACATGATATCAGCAAAAAGATCCAGCATAACGATCTTTC