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Detailed information on CNT30108832


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692603Oryza longistaminataOryza sativa94.1193.2597.41230forward
CNT30596524Oryza longistaminataOryza meridionalis30.9971.5595.56405forward
CNT30101345Oryza longistaminataOryza rufipogon35.2799.5797.83461forward
CNT30115989Oryza longistaminataOryza nivara61.2168.4397800forward
CNT30550983Oryza longistaminataOryza brachyantha5.4321.7887.3271forward

Expression of CNT30108832

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MHGSYSCCSGDGSSSGSGSICSSSNNVNMSSSNICSSTCEFSSVLYIC*

Sequence

>CNT30108832
CAGTGTTGTTGCATACATCAAACGCATCTCATACATTATTCATCTAAAATAGAAATAATGAAAATTAAATAAAAATGTTGGTGTGATCTGTGACCACACC
TAATTGCTTTAGGAGATTTTAAATATAAGATTTAGGCAAAAGAGAAAATTTAGAGTTGCTTGATGTCACATATTTTGCAACCAAACCATTTTGGGGCACA
AAATTAGTAACATTAGCCATCTCTTAGGAGCTTCCAAAACTATTTATTTCTTAGGTAAACTCTGAGTTTTTGGGCAATTGAAAATCAGTCCCTAAACTCA
AAGTAATCTCCATATTTTTAAAGTCTATGGTACTATAATGCAAAAGTTACAAATATCATACTTTTCACTAGATTTTTATTTAATTGCAAATCTGTGAAAA
ATTATGCTGAGCCTCCACCGAATAAACCATGCTTAGGTGTCAAACAGGGAGACCACCAGTAAAACCTTAGTAGGTGAGTCACCTAGTAGTCAACCATGTC
CCTGTGACAAAAAACATATCAGTGTGAACTCCATCCTGACCGAGCCTCGTTTTCCTCGTAAAGACCAAAACCAGTTAGCAAGAAGAACCACCATAACCAG
AGAGTTAGAGAAGAAAAGAAAAATACAAGAGGGCAAAATCACCCAACATCAGGTGGAGCAGGGGCTCCAGCTCCATTAGGAGCAGGTACCCCAGCTCAAG
GAGGAGACGCTGATTCAGTAGAATCAACCAACCAATAGAAGCTGCAGTAGAAGCAAAAGAGGAGTTCAGCCATATATTTTCACAACCACTGAATAATCAA
CAAAGAGAAGTTCGAGTTCCTGAGGAATCATTCATTTCGACTGAATCTGAGGGTATTCATGGTGTTTTCTATCCAGATGTTGAATCATTAGAATCTGTTG
AAGAAGAATATATGGCTGGAAGTGAAGGAACTCACGTTATGGATGACAACCAGGAAGGACTCTACGATGATGCTGAGATTGACTATGATAATTAGTGTAT
AATATGCATGGTTCATATAGTTGCTGTAGTGGTGATGGTAGTAGCAGTGGCAGCGGTAGTATTTGTAGTAGTAGCAATAACGTTAACATGAGTAGTAGTA
ATATCTGTAGCAGCACTTGTGAATTTTCTAGTGTGCTGTATATTTGCTGAGCTTTTGGGGTTTGTATATTATTTTGTTGTTATCGCTCGAGGCTTGTCTT
GAGCTGTATCTATGGTACTGTAATAACCGGAACCAATGCGATGTTTCTGCTATGCTACTCTGATGTGCATATCTCTGAGTAAACGATGTTTATGAAGATA
TATGCTA