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Detailed information on CNT30108688


BLAST search results

BLAST vs Swiss-Prot:
sp|Q09020|PR4_PHAVU, E-value = 8e-23

BLAST vs NONCODE:
NONORUT002251, E-value = 1e-68

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30524561Oryza longistaminataSetaria italica27.9913.4888.54157forward
CNT30639598Oryza longistaminataNymphaea colorata24.7823.2882.73139forward
CNT30533654Oryza longistaminataEucalyptus grandis24.9628.5787.86140forward
CNT30549812Oryza longistaminataIpomoea triloba25.8527.282.07145forward
CNT30514302Oryza longistaminataJuglans regia23.5323.1290.15132forward
CNT30275526Oryza longistaminataChenopodium quinoa25.4925.9185.31143forward
CNT30180424Oryza longistaminataSecale cereale26.7423.1892.67150forward
CNT30221624Oryza longistaminataHordeum vulgare26.7422.1292150forward
CNT30386243Oryza longistaminataTriticum turgidum26.7422.1692.67150forward
CNT3084841Oryza longistaminataVigna radiata23.7124.9183.46133forward
CNT30249706Oryza longistaminataAvena sativa26.7423.1594150forward
CNT30467515Oryza longistaminataSaccharum spontaneum26.9220.5291.39151forward
CNT30135597Oryza longistaminataLolium perenne26.7429.0193.33150forward
CNT307034Oryza longistaminataZea mays27.0919.2690.13152forward
CNT30624138Oryza longistaminataDaucus carota25.1326.4585.11141forward
CNT30346089Oryza longistaminataEragrostis tef26.0225.9891.1146forward
CNT30597257Oryza longistaminataOryza meridionalis59.1866.5399.4332forward
CNT30355824Oryza longistaminataLactuca sativa25.4918.3381.12143forward
CNT30371492Oryza longistaminataOryza glumipatula57.2259.7899.38321forward
CNT3053146Oryza longistaminataAmborella trichopoda24.7822.0682.73139forward
CNT30104475Oryza longistaminataOryza rufipogon38.8638.79100218forward
CNT30578401Oryza longistaminataOryza barthii38.8639100218forward
CNT30581754Oryza longistaminataEchinochloa crusgalli27.9920.5291.08157forward
CNT30118085Oryza longistaminataOryza nivara59.3662.3699.1333forward

Expression of CNT30108688

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MIYDVNSPLFRSFLSQKGGASSDKRKMEEQKPKEQRPKASENKPVMNE*

>peptide 2 (48 aa)
MGVQARICSSVCYRYRFDSTTNGLIGILDVKDLFDPLVILVLISSNLR*

Sequence

>CNT30108688
GCCGCCCTTATACAGAAAGCAGCATCCCGTGCTTATAATCTCCACCCTTCTACCCCAGTATCCGGACACCCCGTGAAACCCTAGCGACTCTTGCACCGGC
GGCGGCGGCGGCGGCAGCAAAGGCGAAGATGATCTACGACGTGAACTCCCCTCTCTTCCGCTCCTTCCTCAGCCAGAAGGGCGGCGCCTCCTCCGACAAG
AGGAAAATGGAAGAGCAAAAGCCAAAGGAGCAGAGGCCCAAGGCCAGTGAGAACAAGCCTGTGATGAATGAATGAAGGCTTTCTGATGTGTTTGGTCCTT
ACAAGGAATAGGCTTCAATCATGTGATTCCTAGATCATTTCTTGAATGGCTCTGAGACGGCAGCTGGGTTATGGGAGTACAAGCTCGTATATGCAGTAGC
GTCTGTTACAGGTACCGATTTGACAGTACCACTAACGGATTAATAGGGATTCTGGATGTCAAAGATTTGTTTGACCCACTCGTAATTTTGGTCTTAATAA
GTAGCAATTTAAGGTGACAAGAAATTTGAACTCAAAAACAATTCAGGTAACTGAAATGCAG