« Back to Oryza longistaminata search


Detailed information on CNT30108589


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30553468Oryza longistaminataOryza glaberrima49.3654.8493.01272forward
CNT30596095Oryza longistaminataOryza meridionalis10.1620.9798.2156forward
CNT30101338Oryza longistaminataOryza rufipogon64.6146.698.03356forward
CNT30116476Oryza longistaminataOryza nivara38.4833.0797.64212forward

Expression of CNT30108589

Peptides detected in this lncRNA

>peptide 1 (63 aa)
MHDSTSSRAVDHIRVRYIITRESKENLRFIYSTVTLGSSASSSSSAAAAAAASLALLQLSTTA*

>peptide 2 (52 aa)
HPWFTYIPYTPVQVYTTTGLSDTDMLTAVRSRCRMYISSTDYADTKTIHGNQ*

Sequence

>CNT30108589
AGCACCCATGGTTCACATATATACCGTATACTCCAGTACAAGTATACACAACGACAGGCCTGTCGGACACTGATATGTTAACAGCCGTGAGGTCTCGATG
CCGCATGTACATTTCATCTACAGATTATGCCGACACAAAAACGATACATGGAAATCAATAAGCCAGTCATGGTGACATTGAAGGTGTGAATGGAGTGATG
CTGACATGTTACCAACTGGAGTGAGCACCGGATCGTCCGACCGATCCAACGCTGGTTTCATCTTATTACCCTCTTAAAATCGTATAATTATTTTAACATC
CTCCCCTCACCATGTAAAAAAAGGATCAATCACTGCAATGCACGACAGCACGAGCAGTCGAGCAGTAGACCACATACGCGTAAGGTACATAATTACACGG
GAATCCAAAGAGAATCTACGATTTATTTACAGCACGGTGACCCTCGGCTCGTCGGCGTCGTCGTCGTCGTCGGCGGCGGCGGCGGCGGCGGCGTCCTTGG
CCCTGTTGCAGTTGTCGACGACGGCGTAGAGGCGGTAGGGCGATGCGTCGG