Detailed information on CNT30108528


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT001792, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692903Oryza longistaminataOryza sativa99.5444.298.63656forward
CNT30553641Oryza longistaminataOryza glaberrima81.0348.0698.5534forward
CNT30371243Oryza longistaminataOryza glumipatula99.753.295.28657forward
CNT30100385Oryza longistaminataOryza rufipogon99.748.3497.72657reverse complement
CNT30575705Oryza longistaminataOryza barthii99.2437.198.62654forward
CNT30117644Oryza longistaminataOryza nivara99.2437.1897.86654forward

Expression of CNT30108528

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MHKSCVYFTSSRLYLLSILYSLLCLIWFLGT*

>peptide 2 (37 aa)
MVWIVWFISVLTFLITACRDVRIFRGDSAEISNNFRT*

Sequence

>CNT30108528
CCGGATGTTCTGTTTACATTATTCAAGAACCATGCGTAGCCATGGGAGTGCAATTTGGATCTTTATTCATGATCCTTGAGAAGCGCTGATCACGCTTGCT
CGGCTTACCGGTAATGCTAAGAGGATATTCACACCTGCCCGGGAGGGAACTACTATCTTTTGACTTCTTTGGTTTAAAAATAAAGTAAATCCAACCCTTC
ATATTGGTTTCTTAATGCATAAATCATGCGTATATTTTACTAGTTCAAGATTGTACTTGCTGAGTATTCTTTACTCACTCTTGTGTTTAATTTGGTTTTT
AGGTACCTAATGACATCGATCGGCATGGGGCGGGAGTAGCACCCTTGGACTACACATTATTATTGCACACAATTGAAATTAGTTTTAGACTATAATTTTT
GCTCAGCATAAGTTTTGCATAGAACTTGTAAATGTCATTTATGGTTTTGATCCTTATTTTTCACGTGGGATTTGTGGAGCTAGGATGGTTTGGATTGTGT
GGTTTATATCGGTATTGACCTTTCTTATAACTGCCTGTCGTGATGTCCGTATTTTTAGGGGAGACTCTGCCGAAATTTCTAATAATTTTAGGACTTAGTT
TTTGAGTGTATTTTGGTGTGGCATTCTAGGTACGTGGTTACCTGGGGTGTTACAGTAGG