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Detailed information on CNT30108499


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30596325Oryza longistaminataOryza meridionalis32.1333.2893.27223forward
CNT30101628Oryza longistaminataOryza rufipogon25.553.3198.31177reverse complement
CNT30576574Oryza longistaminataOryza barthii73.4955.0299.8510reverse complement

Expression of CNT30108499

Peptides detected in this lncRNA

>peptide 1 (48 aa)
STASSLAGEHPSLPTPHQVFCVIPQKVWGFNRNRVRSASAQLHLLSSC*

>peptide 2 (55 aa)
LPPHRRSPVSIPPYPHLIRYSALSLKKFGGSTETGLDLPLPSSTYFQVVNFDFRF*

Sequence

>CNT30108499
CTTCCACCGCATCGTCGCTCGCCGGTGAGCATCCCTCCCTACCCACACCTCATCAGGTATTCTGCGTTATCCCTCAAAAAGTTTGGGGGTTCAACCGAAA
CAGGGTTAGATCTGCCTCTGCCCAGCTCCACCTACTTTCAAGTTGTTAATTTTGATTTCCGTTTTTAGCATATGTAATTTGGTTACTGAATCTCATCCAA
ACACCCTTAGAACGAAAAATGTAAGCTCACATAATTTGTACTCATCCAAACTCACATAAATTTCTTAAGAAGAATCTAGACCACAAACTACCCATAGTCA
CACAAAATATCTTTTTATCAAGGTATATTCTTATAAGTAATTTTTATTCCACAAAATTTTCTAAAGGACATACTGTGACACTTGGCATTAATCTAATTTA
ACTTTTTTTTCTTTATCAGGTTATAAATTTTCTAAGACATTTGTGCCACTTGGCATGAATCTAATTTAACATTCTTTCTTTATCAGGTTATAAATTGAAA
CCATTGAACGTACTCCCAACTTCCCAATTAGTTTTGCTAGTAAATATAAACAAACATTAGTTTTGTGCACACAATTCACGTGCTCCCAACTTCCCAAGTC
CACATCACCCTTCACCCATTCCTCCACTTGAGCCAAAACACCACGTTATCCTAAAACCCCAACTGACAGATAAGCCCCACCCGACAGTCCATCC