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Detailed information on CNT30108407


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30151494Oryza longistaminataBrachypodium distachyon64.8516.4390.84262forward
CNT30101481Oryza longistaminataOryza rufipogon86.6398.3199.14350forward
CNT30576227Oryza longistaminataOryza barthii78.9694.6699.37319forward
CNT30603976Oryza longistaminataOryza punctata63.1210098.43255forward
CNT30336357Oryza longistaminataCynara cardunculus24.7523.8783100forward

Expression of CNT30108407

Peptides detected in this lncRNA

>peptide 1 (47 aa)
WHPLQEHQRQVVLFHIHDRILMLCDKNLKLHSSVQALSLKHQQIPCV*

>peptide 2 (29 aa)
MAKKSNGPACSYKEVALFQSAFHLVKLNFV

>peptide 3 (33 aa)
MCLAASQGEEIISCPFEAFSKASFAFSFSFLNL*

Sequence

>CNT30108407
CTGGCACCCTTTGCAAGAGCATCAGAGGCAGGTTGTGCTCTTCCACATTCACGATAGAATTCTGATGCTCTGCGATAAAAATCTGAAACTTCATTCCAGC
GTCCAAGCTCTTTCGCTAAAGCACCAGCAGATTCCATGTGTTTAGCAGCATCACAGGGTGAAGAAATCATTTCCTGTCCTTTTGAAGCCTTCTCAAAGGC
ATCCTTTGCTTTCTCATTCTCCTTTTTGAACCTATAAGCAATAGCTTTAAAGTAGATATGAAAGTTCTGTCATATACACCACAGGGAAGCAAATTGATAG
AAAGAAAATAGAACATGGCAAAAAAAAGTAACGGACCAGCTTGCTCATACAAGGAAGTAGCACTCTTCCAATCGGCATTCCATCTCGTGAAGCTCAATTT
TGTT