Detailed information on CNT30108234


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693516Oryza longistaminataOryza sativa48.0760.8793.94462forward
CNT30553784Oryza longistaminataOryza glaberrima48.0732.5493.51462forward
CNT30101813Oryza longistaminataOryza rufipogon25.4952.4695.1245reverse complement
CNT30576369Oryza longistaminataOryza barthii48.0725.7193.94462forward
CNT30116872Oryza longistaminataOryza nivara48.0749.2594.16462reverse complement

Expression of CNT30108234

Peptides detected in this lncRNA

>peptide 1 (71 aa)
KNGFPHLHDSKFAHFLSPYSLPLPSPQSLLHEPPPPPSQPFISACVMPPPPRWCLGMLPINKSLSSSAYCC*

>peptide 2 (63 aa)
KTASLTSTTLSSLTSSPPTLSLSHLPNPCSMSHHRLRHNPSSPPASCLLPLDGALACSQSINP*

>peptide 3 (37 aa)
MSLSRMDLGMVSGSEALPSEQWQRAEFSTVMAARCCD*

>peptide 4 (41 aa)
MTLVGGSSDVALSHGPGDGKRQRSPPQRAMATGGVLHCDGG*

>peptide 5 (29 aa)
MDPEVAAIGGSSASGVWCSHEQIRQQQGL*

>peptide 6 (31 aa)
MAGALVGRSSSDNDSCGRIQRCRSLAWTWGW*

Sequence

>CNT30108234
AAAAAACGGCTTCCCTCACCTCCACGACTCTAAGTTCGCTCACTTCCTCTCCCCCTACTCTCTCCCTCTCCCATCTCCCCAATCCCTGCTCCATGAGCCA
CCACCGCCTCCGTCACAACCCTTCATCTCCGCCTGCGTCATGCCTCCTCCCCCTCGATGGTGCCTTGGCATGCTCCCAATCAATAAATCCTTGAGCTCAT
CGGCATACTGTTGTTAACGACCAGCATCAACAACTGCATGGATCCAGAGGTGGCGGCAATAGGCGGATCGAGCGCTAGTGGTGTTTGGTGCTCTCACGAG
CAAATCCGGCAACAGCAAGGGCTCTAGCAGGCGGATCCATCAGTGGGTGCTCTTGCGAGCAGATCCGGCAGTAGCAAGGGCTCTAGCAGGCGGATCCAGC
GGTGGGTGCTCTCGCAGGCCGATCCAGTGGTGGCAAGGGCTCTCATGGAGTCACGGCAGTGGCGGCGGGTGCCATTCGTGGGCTGATCTGGTGGCAGCGA
GGGCTCTAGCAGGCGGATCCAGCGGCGGCAAGGGCTCTCGCGGCGGCGGGTGCTCTCGTAGGCAGGTCCGACGATGGCGGGTGCTCTTGTGGGCAGATCC
AGCAGTGACAATGACTCTTGTGGGCGGATCCAGCGATGTCGCTCTCTCGCATGGACCTGGGGATGGTAAGCGGCAGCGAAGCCCTCCCCAGCGAGCAATG
GCAACGGGCGGAGTTCTCCACTGTGATGGCGGCTAGATGTTGCGATTAGTGTATTGTGTGATTGATTCTATGATTATGTGCTTGTGTGCTTCGGTTCTGG
GATGTTGAGCGATGAATGTTCGATTGTGACGTGAACTTGTGGCTTCTTTTTTTTTAAAAAAAATGTTTTTTTATTTAAAGCATCAGCTCGAATTGAGCTA
AGCCTGTATTTTTTTAATTGAATCATACAACTCATATATGTATGTTCTTAATCCGACACCG