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Detailed information on CNT30108228


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SU13|FLA2_ARATH, E-value = 7e-17

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695832Oryza longistaminataOryza sativa15.8923.8784.97153forward
CNT30523645Oryza longistaminataSetaria italica10.0735.9392.7897forward
CNT30721730Oryza longistaminataTriticum spelta11.8441.1686.84114forward
CNT30370943Oryza longistaminataOryza glumipatula36.1432.8999.43348forward
CNT30102939Oryza longistaminataOryza rufipogon34.1634.3499.39329forward
CNT30117331Oryza longistaminataOryza nivara37.5931.2199.17362forward

Expression of CNT30108228

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MMSLIIYNTLSNLIDHYHYKMITTNPINKRK*

>peptide 2 (56 aa)
MKNSRITPLIKFLLFCFNFFPGNCSDKYIDIKINSPSYFLHQRGTRIGRKKKRERS*

>peptide 3 (75 aa)
MASTAASTGQKSVSPLSLVALMLLYTSAFEARRPAKFLQYFLERSSVRFTGAGGATGASASGEDSGLLIWSTARS*

Sequence

>CNT30108228
CCAGCTTAAAAAGAAAAGCCAAAAAGGATATGGAGTACAACTCTAAACTTGATGATGTCTTTAATCATATATAACACACTGTCCAATCTCATTGACCACT
ATCATTACAAAATGATCACCACAAACCCAATAAACAAAAGAAAATGAAAAACTCTAGAATCACACCTCTAATTAAGTTTCTTCTTTTTTGTTTCAATTTT
TTCCCTGGGAACTGCAGCGATAAATATATAGATATAAAAATAAATAGCCCTTCTTATTTTTTGCACCAACGAGGGACACGAATTGGACGAAAGAAGAAGA
GGGAGAGGAGCTGAAGAACTCAACACAAAATGCACTAAGCTCAAACCACCACCTCAAGCTGCCAACGCCAACGCCGCGGCGGCCCTCGCGGCGTGGGCGA
CACACCCCGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCGGGGGTGCCGTCGGGCGAGTCGGCGGCGGAGGAGTCGTCGGAGGGGGCGGCAGCGG
CGGAGGTGGTCGACGGCTTCTTCTTCTTGGTCTTCTTCTTGGGGCCCTCCGGCGCGGGCGCCGGTGCCAGGTCCTCGGTGACCTTGAAGAGCTCCTTGGG
CTGCAGGAACTTGGAGATGGCGTCGACGGCGGCGTCCACGGGGCAGAAGAGCGTCAGCCCGTTGTCCTTGGTCGCGTTGATGTTGCTGTACACGTCGGCG
TTCGAGGCGAGGAGGCCGGCGAAGTTCTTGCAGTACTTCTTGGAGAGGAGCTCGGTGAGGTTCACCGGCGCCGGCGGGGCCACGGGCGCCTCCGCCTCAG
GGGAGGACAGCGGCTTGCTGATCTGGAGCACGGCGAGGTCGTAGGGGATCTCCTTCACGGACTTGACGAAGCTCGACGGCGTCGCGCTGTCCGCCGCGTC
CTCCGCCGTGAACGACACGCGCCCGCCGCGGTGCTGCGTGATGTTCACGTACCCCGTCGTGCC