Detailed information on CNT30108168


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT003266, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691303Oryza longistaminataOryza sativa71.8653.5497.191673forward
CNT30555137Oryza longistaminataOryza glaberrima4.4724.389.42104reverse complement
CNT30100211Oryza longistaminataOryza rufipogon21.6199.4199.6503forward
CNT30575176Oryza longistaminataOryza barthii28.2699.8599.24658forward
CNT30115971Oryza longistaminataOryza nivara79.8185.2797.261858forward
CNT30550641Oryza longistaminataOryza brachyantha19.5427.983.74455forward

Expression of CNT30108168

Peptides detected in this lncRNA

>peptide 1 (70 aa)
MYDIDRLGCNTHVKGKTIRFYGVKLFGKQVSYQQNRACLGCTASFCFLFDINKQNIVPIQSKRFFFQDKQL

>peptide 2 (77 aa)
VIHDKQCVSHKFGTMLYSIHTQPSAMVHINSDSPCPKWVYVNSDTSCPKWQGKVHMYKFRYILSKMAREVHKLRTRW*

>peptide 3 (56 aa)
MNCTVYDNIRGSIVFLFTKIQLCRVEVARVYKKLFPRNRNTKHVCYMLVLVRASIQ*

>peptide 4 (51 aa)
MRFSQIWHNAIQYTHTAQCHGSYKFRFTLSKMGLCKFRYILSKMARKSTYV*

>peptide 5 (76 aa)
MDPSESSEGKFSLPSVQLVGSFSLEPAETINSALLDFYAVVSRSHRGKSQTRKRKAWKFISQIYQQQLSDSTLTEK*

>peptide 6 (31 aa)
MRTYPFLQRTVRLLSRVYNDCLRRYPQILQC*

>peptide 7 (29 aa)
VLSMISNAFLTNLAQCYTVYTHSPVPWFI*

Sequence

>CNT30108168
GTGTTATCCATGATAAGCAATGCGTTTCTCACAAATTTGGCACAATGCTATACAGTATACACACACAGCCCAGTGCCATGGTTCATATAAATTCAGATTC
ACCTTGTCCAAAATGGGTTTATGTAAATTCAGATACATCTTGTCCAAAATGGCAAGGAAAAGTACATATGTATAAGTTCAGATACATCTTATCCAAAATG
GCAAGAGAAGTACACAAATTAAGAACAAGATGGTAACACCGACATAGGTTCCTACAGCAGCAAAATACAATACAGGTAGCAGGTACCATGGTTAAATAGG
TTACATACAATGCTTGGATATAACTCAGACAACTAAAACCTATCGAGTGAATATCTCAGGCAGCCTGTCCGCCCAAGAGACAAGCCCACGGACTAATGGT
TGGCCTACAAGGGCAGATCGATCTGGCGATTCTGAACTAACCTACTACTATACTCACTTTGAAAGGACTGTGTTCTAGTTACAGGTAACCAGGTCTTCAG
CTTCACCATCCTACAACTACTATGATCACTGCTCACATTGAAAGGACTGTGTTCTAGTTACAGGTAACTAGGCCTTTAGCTTCGATCACCATGGACCCGT
CAGAGTCCTCCGAAGGCAAATTCTCTTTGCCGTCGGTCCAACTTGTCGGCTCATTCTCTCTAGAACCTGCAGAAACCATTAACAGTGCATTATTAGACTT
TTACGCGGTGGTGTCTAGAAGCCACAGAGGAAAATCTCAAACTAGGAAACGAAAAGCTTGGAAATTTATCTCCCAAATTTACCAGCAACAATTGTCAGAC
AGTACGCTGACAGAAAAATAAGGAACCCCATTGTGAAGTCATTAAAACCCAACCAAAGGACAACATAAATTAAATAGAATTGAGTGGTGATTTGTGTTTT
CAAAAATGAATTGTACAGTTTATGATAACATCAGAGGCTCCATTGTTTTCCTTTTTACCAAAATACAATTATGTCGAGTAGAAGTGGCAAGAGTCTACAA
GAAGCTCTTTCCCAGAAATAGAAATACCAAACATGTGTGCTACATGCTAGTATTAGTTAGAGCAAGCATTCAGTAATTCAGTTTTTGTCCAATCCACATC
TTTTCAGGGATAGCGTAGCCTCTAAAAATCTGATGATTCTAAGTTTCGAACCACTTGTGGCACTCCCTTAGCTTCTGTACCCATTCAAACTAGTGGTCTA
AGATGTGGAAAAACAACTAGGACACAGAGGGAGTGCGGTTTGAAATTCTGCCGCCTCAGTGTTATGAGAACATATCCCTTTTTACAGAGAACAGTCCGTC
TTCTCAGCAGAGTTTACAACGATTGCCTAAGGAGGTATCCACAGATTTTACAGTGTTGAGAGATGTGTTAACTTCATGTAAAGTTCAGTCAAAATTTTCA
GTTAAATTGATTGTAACAAACAATATTGACAGTTTCACAATTGTCTATCCTCTCATAACTTTTTTAAGTGTTATGTTGTGCAAAATACAGTTATACCCCA
CTACGATGGAAACATATGCATATTAAACTATACACACATCAAATAACTGTTTTTTGAATAAACTTTAATTTGCTTGCCCTTCCAATGTTGCTTTTAGTTA
AAACTGTATTATTATAGATGAAATATCGTTTAAATGGCTATAATTCAACAATGATGGCAGTTGACTGGTCAATTCAAAGAATTTCTTTTTCAGTTTAAGC
CATTTAAATGCTGCCACCTAACCCCTGATGTAGGAAAATGCAATCAATCACATCGACATCAGTCCTTGCCTCATTATTTCTCAACCCCCCACAAAGCTTT
ACTTCATCATTGCTTTAAATCCCATACTATAATAAGGTAATAGTGTGAAAGCCAAAACTCACGACCAGTACTACCTCTGTCCCAAAATATAACAATTTTT
AGCTATGAATCTAGACACACAAGTGTCCAGATTCATAGCTAAAAATGCTTACGTTTTGGGACGGAGGGAGTAGCTATCAATCAGAACATAACGTTTGACA
TTCAAACAAGTGTATCAATAATTGTTAATATGCACAGCATACATTTTCCTGACAATAATTGTTAAAATTCACACCATACATTATGAGCGAAAAATAATCA
TAGAGCAGAGCATATGTATGATATTGACAGATTAGGCTGTAATACTCATGTAAAGGGTAAAACTATCAGATTTTACGGAGTAAAACTTTTTGGTAAACAA
GTAAGCTATCAGCAAAACAGAGCATGCCTAGGTTGTACAGCTTCGTTTTGTTTCTTGTTTGACATTAATAAGCAAAACATAGTACCTATCCAGAGCAAAA
GATTTTTTTTCCAAGATAAGCAATTACC