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Detailed information on CNT30108138


BLAST search results

BLAST vs Swiss-Prot:
sp|P10707|CB2D_SOLLC, E-value = 1e-37

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695933Oryza longistaminataOryza sativa58.7748.5799.16476forward
CNT30673431Oryza longistaminataSetaria viridis23.757.6695.31192forward
CNT30522444Oryza longistaminataSetaria italica42.9659.2888.22348forward
CNT30187536Oryza longistaminataSecale cereale51.4847.9394.48417forward
CNT30301046Oryza longistaminataTriticum aestivum53.095294.42430forward
CNT30224983Oryza longistaminataHordeum vulgare25.3133.6196.59205forward
CNT30393967Oryza longistaminataTriticum turgidum45.6861.6794.32370forward
CNT30589400Oryza longistaminataMusa acuminata24.8129.3994.53201forward
CNT30554891Oryza longistaminataOryza glaberrima71.9848.9198.63583forward
CNT30441097Oryza longistaminataAegilops tauschii25.3134.4597.56205forward
CNT30251938Oryza longistaminataAvena sativa52.3553.692.22424forward
CNT30665949Oryza longistaminataTriticum dicoccoides53.0950.5994.65430forward
CNT30473044Oryza longistaminataSaccharum spontaneum54.249.8392.03439forward
CNT30129613Oryza longistaminataCorymbia citriodora51.8557.3890.48420forward
CNT30685781Oryza longistaminataTriticum urartu42.7239.6893.35346forward
CNT30721767Oryza longistaminataTriticum spelta25.3127.397.07205forward
CNT30345519Oryza longistaminataEragrostis tef25.4335.5294.66206forward
CNT30371011Oryza longistaminataOryza glumipatula70.628898.95572forward
CNT30103236Oryza longistaminataOryza rufipogon99.8881.9799.13809forward
CNT30577669Oryza longistaminataOryza barthii77.5366.8898.41628forward
CNT30579831Oryza longistaminataEchinochloa crusgalli25.3122.5395.61205forward
CNT30499073Oryza longistaminataDigitaria exilis43.747.5287.57354forward
CNT30117588Oryza longistaminataOryza nivara71.9848.398.8583forward
CNT30603587Oryza longistaminataOryza punctata41.9866.9395.29340forward

Expression of CNT30108138

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MVIFWDRGSNCFRSNRDEKSANQNNTTDKYLDH*

>peptide 2 (59 aa)
IRKFKVLINPFMPQYKQFRLHIYTIHSQKWLYFGIEGVIVSDLIEMRNPLIRITPQIST*

>peptide 3 (74 aa)
MAWTKKPNMENMARRPFLISFTLSSANASGSSARSSGKTQPSAPSIAHREWITSSSRFLANVSGSAESPAVSHP*

Sequence

>CNT30108138
GTATACGTAAATTTAAAGTACTAATTAATCCTTTCATGCCACAATATAAACAATTTAGACTACATATTTACACTATACATAGCCAGAAATGGTTATATTT
TGGGATCGAGGGAGTAATTGTTTCCGATCTAATAGAGATGAGAAATCCGCTAATCAGAATAACACCACAGATAAGTACCTAGACCATTAGTTGGGAAACG
AATAAAATCATTATTGCAAAAACATCATCTTCTTCTTCATCTTCTTAGTGTACACAACACCAACTCGATCATCATCTCGTCGCACTAAACCCATCTTCCC
CAACCCAAAGACAACGAACTCGCTGGCCACAAATCCATCCAACCACAATTAACCACTGCTAAGCTACGGTCCCCCACTTCACTTGCCGGGGACGAAGTTG
GTGGCGTACGCCCAGGCGTTGTTGTTGACGGGGTCGGTGAGGTGGTCGGCGAGGTTCTCGAGGGGGCCCTTGCCGGTGACGATGGCCTGGACGAAGAAGC
CGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGATCTCCTTCACCTTGAGCTCCGCGAACGCCTCGGGGTCGTCGGCGAGGAGCTCCGGGAAGACGCA
GCCGAGCGCGCCCAGCATCGCCCACCGGGAGTGGATCACCTCCAGCTCCCGGTTCTTGGCGAACGTCTCCGGGTCGGCGGAGAGCCCCGCGGTGTCCCAC
CCGTAGTCGCCCGGGAACTCGCCGGTGAGGTAGCTCGGCGGCTCGCCGGAGAGCGGGCCGAGGTAGAGGACGCGGTCGGCGCCGTACCACGGGCTCCCCG
ACGCCGCCGG