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Detailed information on CNT30108136


BLAST search results

BLAST vs Swiss-Prot:
sp|P04159|CB21_PEA, E-value = 5e-75

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696234Oryza longistaminataOryza sativa76.7867.8899.51615forward
CNT30298565Oryza longistaminataTriticum aestivum52.8148.991.02423forward
CNT30394956Oryza longistaminataTriticum turgidum43.9539.3392.9352forward
CNT30554869Oryza longistaminataOryza glaberrima99.8882.9998.75800forward
CNT30665775Oryza longistaminataTriticum dicoccoides52.5650.1293.35421forward
CNT30473739Oryza longistaminataSaccharum spontaneum44.4447.3492.98356forward
CNT3011490Oryza longistaminataZea mays44.4439.7393.54356forward
CNT30362790Oryza longistaminataSorghum bicolor52.0646.3889.93417forward
CNT30150713Oryza longistaminataBrachypodium distachyon53.8173.887.7431forward
CNT30582922Oryza longistaminataEchinochloa crusgalli42.3237.7992.63339forward
CNT30497363Oryza longistaminataDigitaria exilis43.0729.3192.75345forward
CNT30603457Oryza longistaminataOryza punctata43.4536.2995.4348forward

Expression of CNT30108136

Peptides detected in this lncRNA

>peptide 1 (59 aa)
IRKFKVLINPFMPQYKQFRLHIYTIHSQKWLYFGIEGVIVSDLIEMRNPLIRITPQIST*

>peptide 2 (33 aa)
MVIFWDRGSNCFRSNRDEKSANQNNTTDKYLDH*

Sequence

>CNT30108136
GTATACGTAAATTTAAAGTACTAATTAATCCTTTCATGCCACAATATAAACAATTTAGACTACATATTTACACTATACATAGCCAGAAATGGTTATATTT
TGGGATCGAGGGAGTAATTGTTTCCGATCTAATAGAGATGAGAAATCCGCTAATCAGAATAACACCACAGATAAGTACCTAGACCATTAGTTGGGAAACG
AATAAAATCATTATTGCAAAAACATCATCTTCTTCTTCATCTTCTTAGTGTACACAACACCAACTCGATCATCATCTCGTCGCACTAAACCCATCTTCCC
CAACCCAAAGACAACGAACTCGCTGGCCACAAATCCATCCAACCACAATTAACCACTGCTAAGCTACGGTCCCCCACTTCACTTGCCGGGGACGAAGTTG
GTGGCGTACGCCCAGGCGTTGTTGTTGACGGGGTCGGTGAGGTGGTCGGCGAGGATGCTCTGCGCGTGGATCAGGCTCGGGTTGCCGAGGTAGTCGAGCC
CCCCCTCGCTGAAGATCTGCGAGCCCGCCTTGAACCACACGGCCTCGCCGAACTTGACGCCGTTCCGGGCGAGGAGCTCCGGGAAGACGCAGCCGAGCGC
GCCCAGCATCGCCCACCGGGAGTGGATCACCTCCAGCTCCCGGTTCTTGGCGAACGTCTCCGGGTCGGCGGAGAGCCCCGCGGTGTCCCACCCGTAGTCG
CCCGGGAACTCGCCGGTGAGGTAGCTCGGCGGCTCGCCGGAGAGCGGGCCGAGGTAGAGGACGCGGTCGGCGCCGTACCACGGGCTCCCCGACGCCGCCG
G