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Detailed information on CNT30108025


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693031Oryza longistaminataOryza sativa13.9445.2294.23156forward
CNT30552585Oryza longistaminataOryza glaberrima61.3939.6499.56687forward
CNT30104665Oryza longistaminataOryza rufipogon22.4317.4997.21251reverse complement
CNT30578086Oryza longistaminataOryza barthii100.8976.6597.71129forward

Expression of CNT30108025

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MGQRRGTYRCQRSLIKQSGFFLLANDLPSQYLFLLQ*

>peptide 2 (37 aa)
MFWGICWSELEKFELWSLIASEPLQPLLSDLIFYIWL*

>peptide 3 (93 aa)
MGLICPREELLDRAVHPGQHVSADAKTVEHIYLVLIFVCIHGVRFISIFALHLHGIRMRSIERRKMVVDHGAASRNIQVSTIFNQTKWIFLAS*

>peptide 4 (52 aa)
MDRKGKDGPSLPKVRTGRCARTDLLESANCSGETLFGMQWLEGALCLCLMDL*

Sequence

>CNT30108025
GGAGCAAGCAGCCGCGGCCCAGGTAGCTAGCAGGCAGGACCACAGCACTGCAGCAGTTTCTAGCTGAGCTTGGGATCCTGTTTTGTCTTGTCTTGTGATT
TGCGATTTGTGATCCCTGATTTTGTGGATTTGGGAATTGAGAATATGGATAGAAAAGGGAAGGACGGTCCATCCCTGCCAAAGGTGAGGACTGGGCGCTG
TGCACGGACTGACCTTTTGGAAAGTGCTAATTGCAGTGGGGAGACACTCTTCGGGATGCAGTGGCTGGAGGGGGCATTGTGTTTATGCCTAATGGATTTA
TAAGATTGTTATTCCATTAGTCAATATTGATCTGCATCCTTCTAAGTTCTTATATGATGAGAAGAGAGTTGAAATGTATTTGAGTTCTTGTTTCAGTGCT
TTTTATATTAGTATAGATAAGATCGTTGTTTTCTACGCAGCATTCCAACTTAAGCAGTAAGTACTTTGGTTGTGTCAGGTTGACTTGGCCAGAAGGAAAT
AGTCATATTTTGTAAGAGTGTGATACAAATGTCATTATAGATTGTAGTAACTTTGTGCCTAACAAAATATGCCTAACTTCTGTTTGATGAAATAACTAAC
TGTGCTTGGCAAGCTTATAACCTATGTTTGTGTATGGGTTTAATTTGTCCTAGAGAAGAGCTGCTGGATCGTGCAGTTCACCCTGGTCAGCATGTCTCAG
CAGATGCAAAGACAGTGGAACATATTTATTTGGTGCTAATTTTTGTTTGCATCCATGGAGTTAGGTTTATATCTATTTTCGCATTGCATTTACATGGAAT
TAGAATGAGGAGTATTGAAAGAAGAAAGATGGTGGTGGATCATGGGGCAGCGTCGAGGAACATACAGGTGTCAACGATCTTTAATCAAACAAAGTGGATT
TTTCTTGCTAGCTAATGATCTGCCCAGCCAATATCTGTTCTTACTCCAATAAAATGATGCTTTGTAGGAATGTTCTGGGGCATATGTTGGTCTGAACTTG
AAAAGTTTGAACTTTGGTCACTCATTGCTTCTGAACCACTGCAACCTCTACTTAGTGACTTAATCTTCTATATTTGGTTGTGAATTGCTCTTCAATGTTC
TAACATTGGTCAATGACCG