Detailed information on CNT30107957


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30102385Oryza longistaminataOryza rufipogon88.2885.8595.181183reverse complement
CNT30577080Oryza longistaminataOryza barthii93.1362.1596.711248forward

Expression of CNT30107957

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MNESECIMHCACSCSISGQRDRLASGNQTRYLFHYLNILP*

>peptide 2 (34 aa)
MRVSASCTVHVHAQFLGKEIDLHLAIKLDIYSII*

>peptide 3 (60 aa)
GQEGAQVASPGAPMGRALIHHHRATNISDEKRRMQACSCSVADMNYKLQRVVCHCVQRSH*

>peptide 4 (44 aa)
RGRRVLKWLPLERRWVEHSSTIIEPQTFLMKREGCKLAVALLQI*

>peptide 5 (56 aa)
MPLVDFQEKKCTGWRQLKILPSGAVKYLRNTCYEHLATLESDIFASWIQHILVGDC*

Sequence

>CNT30107957
CGGGGCAGGAGGGTGCTCAAGTGGCTTCCCCTGGAGCGCCGATGGGTCGAGCACTCATCCACCATCATCGAGCCACAAACATTTCTGATGAAAAGAGAAG
GATGCAAGCTTGCAGTTGCTCTGTTGCAGATATGAATTACAAGCTACAGAGGGTTGTGTGCCACTGCGTTCAAAGATCCCATTGACTAGAAAGATAAGTG
TCATTCTCCCACCTTCTTCTTACTACCTTTTCCTATTCTTGGACACGAACATTTGCTACCTCAAAATGATTTTTTATTCATGTGATCCCTAAGAATATAG
GCATGCAGTCTGAATACATTAGATGCTCACACCAATACTTTAATTAGTAGTTATCAATAACCACCTGTAAACAAATTACTTTCATGTAGGTGATGACTGA
TGAATGAGAGTGAGTGCATCATGCACTGTGCATGTTCATGCTCAATTTCTGGGCAAAGAGATCGACTTGCATCTGGCAATCAAACTAGATATCTATTCCA
TTATCTAAACATCTTGCCATGAGCTAATCTGCTAAAACAGAGAAATAATCTGCTACTTCTACTGTATCTTCTTTCACACTGTAATTCATTTAGTTCAGTT
CAGTGCGCTTTACAGCAGCAAGCAATCTAGCATTCAGTATTTCTGCTTCAATTAGCTGGTGAAGAATCTGATCCTGATCAGAGGCTACCCTTTAGACTTT
AGCTTGCTGGTTTGATTCCCATCATTGGTTGGATGAATGGTCCAAATTTACCCAGTTGCACCAGTAGTTTTAACTAAGCCTGATTTTAATTAACTTAAGA
GTTTCTTTCCTGTAGTGATCAAGCTGCATTCAGTACTGCATTTCTCTGTACTTTTCTCTCTACTGTATACTTTGTCAGCTTGTTGAGAACTAGATTAGAT
TTCTCTCTACTGTATACTGCATTTCAGTACTGCATTTCTCTGTACTTACAATGATGTCTGCTGAGTAGGATCTTGTAAAGGGTAAAGATACATTGATGCC
ATTGGTTGATTTTCAAGAGAAGAAATGTACAGGATGGAGGCAGCTGAAGATTTTGCCATCTGGAGCGGTGAAATATCTCAGAAATACATGCTATGAACAT
TTGGCAACCTTAGAATCAGATATCTTTGCTAGTTGGATACAACATATCCTTGTAGGTGATTGTTGATGGTGCATGCAGTCTGTTGAAACCTTTGCATTTT
TCGATTTGTAAGACTTCTGTAATGGTGCATTATCAGAAGAACCAGTTGCTATATGGGTTGTAACTTTTGTGCTATATGGGTTGTAACTTTTATGCAATAT
GGGTAGTTATTGTGTTTGATTGTTGGGCCTATATGGGCTT