Detailed information on CNT30107954


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT003659, E-value = 8e-122

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692309Oryza longistaminataOryza sativa30.8951.4697.65511reverse complement
CNT30576960Oryza longistaminataOryza barthii93.7764.2596.781551forward
CNT30604708Oryza longistaminataOryza punctata100.9773.6395.991670reverse complement

Expression of CNT30107954

Peptides detected in this lncRNA

>peptide 1 (56 aa)
MPLVDFQEKKCTGWRQLKILPSGAVKYLRNTCYEHLATLESDIFASWIQHILVGDC*

>peptide 2 (34 aa)
MRVSASCTVHVHAQFLGKEIDLHLAIKLDIYSII*

>peptide 3 (41 aa)
MMVDPTIHPVALFPRSASSGCIYLRMMILRSKYSCNSSQQW*

>peptide 4 (31 aa)
AASRGAGGCSSGFPWSADGSSTHPPSSSHKQ*

>peptide 5 (33 aa)
RRAAGQEGAQVASPGAPMGRALIHHHRATNSKL*

>peptide 6 (40 aa)
MNESECIMHCACSCSISGQRDRLASGNQTRYLFHYLNILP*

>peptide 7 (43 aa)
GEPRGRRVLKWLPLERRWVEHSSTIIEPQTVSFNLYVSLLNDG*

Sequence

>CNT30107954
GCGGCGAGCCGCGGGGCAGGAGGGTGCTCAAGTGGCTTCCCCTGGAGCGCCGATGGGTCGAGCACTCATCCACCATCATCGAGCCACAAACAGTAAGCTT
TAATCTCTATGTGTCTCTGTTGAATGATGGTTGATCCTACGATTCATCCGGTAGCACTGTTCCCTCGATCTGCAAGTTCTGGATGCATTTACTTGCGTAT
GATGATACTTAGATCTAAGTACAGTTGCAACTCCTCTCAGCAATGGTAATTCTTGGCATGTGTACTTAAGTCTATTATTCTCCTGTCCTACAGAAAGTAA
ATCAATTTATGTAGCAGAGCTTTCTTGCCACGCCACATAGGTAGAGACTAAATATTCTGAACTTGTTTCATTTCATATTCATTTGGAGCTGTAAGTTTCT
GATGAAAAGAGAAGGATGCAAGCTTGCAGTTGCTCTGTTGCAGATATGAATTACAAGCTACAGAGGGTTGTGTGCCACTGCGTTCAAAGATCCCATTGAC
TAGAAAGATAAGTGTCATTCTCCCACCTTCTTCTTACTACCTTTTCCTATTCTTGGACACGAACATTTGCTACCTCAAAATGATTTTTTATTCATGTGAT
CCCTAAGAATATAGGCATGCAGTCTGAATACATTAGATGCTCACACCAATACTTTAATTAGTAGTTATCAATAACCACCTGTAAACAAATTACTTTCATG
TAGGTGATGACTGATGAATGAGAGTGAGTGCATCATGCACTGTGCATGTTCATGCTCAATTTCTGGGCAAAGAGATCGACTTGCATCTGGCAATCAAACT
AGATATCTATTCCATTATCTAAACATCTTGCCATGAGCTAATCTGCTAAAACAGAGAAATAATCTGCTACTTCTACTGTATCTTCTTTCACACTGTAATT
CATTTAGTTCAGTTCAGTGCGCTTTACAGCAGCAAGCAATCTAGCATTCAGTATTTCTGCTTCAATTAGCTGGTGAAGAATCTGATCCTGATCAGAGGCT
ACCCTTTAGACTTTAGCTTGCTGGTTTGATTCCCATCATTGGTTGGATGAATGGTCCAAATTTACCCAGTTGCACCAGTAGTTTTAACTAAGCCTGATTT
TAATTAACTTAAGAGTTTCTTTCCTGTAGTGATCAAGCTGCATTCAGTACTGCATTTCTCTGTACTTTTCTCTCTACTGTATACTTTGTCAGCTTGTTGA
GAACTAGATTAGATTTCTCTCTACTGTATACTGCATTTCAGTACTGCATTTCTCTGTACTTACAATGATGTCTGCTGAGTAGGATCTTGTAAAGGGTAAA
GATACATTGATGCCATTGGTTGATTTTCAAGAGAAGAAATGTACAGGATGGAGGCAGCTGAAGATTTTGCCATCTGGAGCGGTGAAATATCTCAGAAATA
CATGCTATGAACATTTGGCAACCTTAGAATCAGATATCTTTGCTAGTTGGATACAACATATCCTTGTAGGTGATTGTTGATGGTGCATGCAGTCTGTTGA
AACCTTTGCATTTTTCGATTTGTAAGACTTCTGTAATGGTGCATTATCAGAAGAACCAGTTGCTATATGGGTTGTAACTTTTGTGCTATATGGGTTGTAA
CTTTTATGCAATATGGGTAGTTATTGTGTTTGATTGTTGGGCCTATATGGGCTT