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Detailed information on CNT30107897


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6AVI0|RSLE2_ORYSJ, E-value = 0.0

BLAST vs NONCODE:
NONORUT003941, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30249176Oryza longistaminataAvena sativa27.1510085.28632forward
CNT30452219Oryza longistaminataSaccharum spontaneum81.8758.4385.621906forward
CNT30346251Oryza longistaminataEragrostis tef25.5698.1886.05595forward
CNT30362965Oryza longistaminataSorghum bicolor82.7367.5385.11926forward
CNT30596250Oryza longistaminataOryza meridionalis51.4259.2697.491197forward
CNT30100657Oryza longistaminataOryza rufipogon86.6875.0598.462018forward
CNT30576541Oryza longistaminataOryza barthii10074.0998.22328forward
CNT30580242Oryza longistaminataEchinochloa crusgalli83.4275.185.171942forward
CNT30497727Oryza longistaminataDigitaria exilis17.799.0485.19412forward
CNT30557998Oryza longistaminataPanicum hallii44.9342.2887.571046forward

Expression of CNT30107897

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MNSIIHHLNIFRSFNTINFRVAELNELHLEARIHHNSNS*

>peptide 2 (32 aa)
MGITPYNKQLALEHEVVLVGEIIPQIRTVYIM*

>peptide 3 (91 aa)
MRVPVPAEKIELPLLTIDIGMAKISRAIFERVGNLRVLSFHQFRMSNSWMRGVRDSSRYCSSSDFVGWLVAISERYISKSTSPSPVEGAVA*

>peptide 4 (49 aa)
GTEQSHATMDYNEGKYKHKAPADKYYAASAHTTCNIRYNSDGILQTKRT*

>peptide 5 (67 aa)
AQNNHMLQWIIMRGSTNIRHQLINIMQPARTLHAISGTTLMAYYRQSVHNNMNELTEFDTTNYTLGG*

Sequence

>CNT30107897
GGCACAGAACAATCACATGCTACAATGGATTATAATGAGGGGAAGTACAAACATAAGGCACCAGCTGATAAATATTATGCAGCCAGCGCGCACACTACAT
GCAATATCAGGTACAACTCTGATGGCATACTACAGACAAAGCGTACATAACAACATGAACGAGTTAACAGAGTTCGATACAACAAATTACACCCTAGGAG
GATAAGCTCAGATCACAATCAGTTCATAGTCCCTGCCTAAAATACGCCTAGCAGTTAACTTCACAAATAGGTACCATTGGTACATACTGTTGCTTCACAA
AAGGGGGGGAATCACAGCGAGCCTATGGTGCATCCACCTTGACCAGCGCGGTACTCGGCGCCTCTGGGGTAGCTGGTGAATACTGAAGCCAGTCTTTGGC
GCAGAAGAGCGCCTCCACAATTTCTGGACGCAATGAGCTTCTGTAGTCATCAAGCATGCGAGTTCCTGTTCCAGCAGAGAAAATAGAGTTGCCGCTGCTC
ACCATCGACATCGGAATGGCCAAGATATCCCGGGCCATCTTTGAGAGAGTAGGGAACTTGAGAGTGTTGAGCTTCCACCAGTTCAGAATGTCAAATTCCT
GGATGCGCGGAGTGAGGGACTCATCCAGGTACTGTTCCAGTTCAGATTTTGTTGGCTGGCTTGTAGCTATCTCAGAAAGGTACATATCAAAGTCCACAAG
TCCATCGCCGGTCGAAGGAGCAGTTGCTTGAGTACCATTCTCGCTAGCAAGTGCATTATTACCGTCCCCTTGCTCAACATAAGCCGGTGTCAAGGGGAGG
GGTTGTGCAACATACTCCTTGTAAAGCTCATGAACAGCATCATCCACCACCTTAACATATTTCGCAGCTTCAACACCATAAATTTTCGAGTAGCTGAACT
CAACGAGCTTCATCTTGAAGCGCGGATCCATCACAACAGCAATAGCTAACACAAGGTTGCAATCTTTCCAGTACTTGTCAAACCTCTCGTGCATATCCTT
GGCAATGCTGCTGAAAACAGGGTCTTCATGCCCTGTGGCATTTGACAGCTCGAGCTGAAGTTTCCATGCCTCATGGAAAAAGAGATTTGAAGTTGGATTT
GCTGCAGCCATGATGCTATGTGCTGAGTCATACAATAGCTTCAAGTAATTGCAGGCAGCCTCAACTTTTTTCCAGTCCTCAGCGGACGGTGCCTCGTTGT
AGTTATCATCACTTGTCTCTAGAGTAGAAAAGGCCTGCTTATAATCCAAGGCAGCCAGCAGCATGAGATAGGTAGTGTTCCACTGTGTCGTAACATCCAG
ACAAAGGGTCTTGGTACTTGGGATCTCTAGCTGCAGAGCAATCTCTGCAAACTTCTCCTCACAGCTAGGAGAAGCTTTTATGAACTTAATGCTTTCACGG
ATATTATAGATGACACCATGAATTGAAGCAATGACATCCTGAGCAACTGCATTCAGGATATGGGCATAACACCTTACAACAAACAGTTGGCCCTTGAGCA
TGAGGTTGTTCTTGTTGGAGAGATAATCCCTCAGATTCGCACTGTATATATCATGTGATGAGCAATCATTGTCCAATGTGATGGTGAATAGTTTGTCCTT
CATATTCCAGTCTGAAAGGCTTGTACTAATAGCTTCACTAAGTGCATTCTCTGAATGAGGAGAAGACACCATCATGAAGTTTAGCATTCTTCGATGTATC
TTCCACTCAGAGTCAATAAACTGCCCAGCAAGTGAAACATAGCCAAGAGTTTGGCTAGTTGTCCACAATCCAATAGTGAGGCTGATCCTTCCAGGCATAG
TGCTGAATGCTTGCATGAGGTTTTCCTTTTCTTTCTGGTAAACAGCATACACCTCCCCCTCCATTGTCTCAACATCTACAACCCTGAAACGTGGCTGCAG
ACTGTCAATAAAGGTAGTGAAGGCTGGCTGTTGAACAATGTGAAGTGGGTAGTCATGCAAAATTATCATCTTCGCCAGATATGAGCAACTGCGGTCTTGA
TCAAAAGCAGCATTTGCATAACCAGTATATCTGTAACGCCTCTTAGACGGGCGCTCCACAGTACCCTCACCATCATTGTCAGTCCCTCCAGCTGGAGTCA
GTGCTAGCTTGTGCTCTTGGTTCTTAATTTTAGGACATGAACCCAAGGTAATGTGCCTCTTGAGATGGCTAGTACCCGCAATTTTTGAACCAGAGCTGTA
AGCAAAAGTTTGCTTGCACAGTTTGCAGCACGCCCGTGTAGCCCCTCCAGAGACAGCTTCAATAGTGAAGTGCTCCCACACTAGAGACTTCTTCCTACGG
CGCCTTAATGTTGGAGGGGTACTCATCT