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Detailed information on CNT30107840


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7EAG4|DMC1B_ORYSI, E-value = 1e-37

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30224824Oryza longistaminataHordeum vulgare46.9338.8487.38214forward

Expression of CNT30107840

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MQEFTRRNLNNLKTGSTVNEHSVFCIHYST*

>peptide 2 (67 aa)
MNIQSFASIIPPDVTWKTSSPSGRLGASKILQTRCSPLPFLNINRMVAACASTWPPAGFFGSVMNIPP

>peptide 3 (37 aa)
GKVTNMLTSYIFHLRQYCICFSTTVDLISIEKYPVAK*

Sequence

>CNT30107840
GGGAAAGTTACCAACATGTTAACCTCTTATATTTTTCACTTAAGACAATACTGTATTTGTTTCAGTACAACTGTTGATCTCATAAGCATAGAAAAATACC
CAGTGGCAAAGTAGCGGTAGTATCTCAAACTTTGCAAAATTATAATGGCATGGTTCCAATTTACCCTTTTGTCAATGTACCAAACCCATATGGCCTATGC
AGGAATTTACTAGGAGAAACCTGAACAATTTGAAGACAGGAAGCACCGTCAATGAACATTCAGTCTTTTGCATCCATTATTCCACCTGATGTTACCTGGA
AAACGTCTTCTCCCTCAGGCAGGTTAGGGGCATCAAAGATCTTGCAGACACGCTGCTCTCCTTTGCCTTTCCTCAACATCAACCGGATGGTGGCTGCATG
CGCCAGCACATGGCCTCCCGCTGGTTTCTTCGGGTCAGTTATGAACATTCCACCAC