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Detailed information on CNT30107803


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30577654Oryza longistaminataOryza barthii30.6760.1898.88269forward
CNT30117556Oryza longistaminataOryza nivara30.6715.7997.4269forward

Expression of CNT30107803

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MVVAAVGGWLWIWVCVCVWAKVGMVGGEVEGTPLELFYSKLPDSEVNPSLD*

>peptide 2 (30 aa)
MAVDLGVCVCVGESGNGGRGGGRDAIGALL*

>peptide 3 (29 aa)
RGGTKLGTNRRRAGGISDKRLECSHQLLP*

>peptide 4 (56 aa)
GEVGLNWEQTGGEPEASRIKGSSALISSSPDRSIAAAISTLNHNNSTNSSFFWIFF*

Sequence

>CNT30107803
GGCGAGGTGGGACTAAACTGGGAACAAACCGGAGGCGAGCCGGAGGCATCTCGGATAAAAGGCTCGAGTGCTCTCATCAGCTCCTCCCCTGACAGATCTA
TAGCTGCAGCCATATCTACTCTAAATCACAACAACTCAACAAACTCTTCTTTTTTTTGGATTTTTTTCTGATACTGAAACAGTAATAACAAAGATTTGCC
TGGTTCCGAATCCAAAATCAAGAACAGGCAGGAAGGAGGGAGAAATCCACAGCCACAGTAAAAAAACAGATGGCTTTTTGGTGGTAGATCTAGCAAGTGA
GGTGTGGAAAAAGAACCCCTCTTGGCTACCAACCTAACACTAGAACAACACAAAGAAGATGAAAGAAAAACAGCAGATCTGGGAGCCCTGGATCTAAAAG
GCCCTGGGTCTCTCGCTCTCTGCAAGCAACCTAACCAAGAAACCGTGGAAGAAGAAGAAGAACAGGTGGAGGAGCCAGAGGAAGAAGAAGAGGGTTTCGA
GAAAACTGTACCTTGAAGACGCTCGAAGTCGCTCAGATCTAAAGCTTTTCTTACCTCGCTCGAGCTCACGGTGGCTGTGGGTGTTCGTGGGCTTGGAGAT
GGTGGTGGCGGCGGTGGGAGGATGGCTGTGGATCTGGGTGTGTGTGTGTGTGTGGGCGAAAGTGGGAATGGTGGGCGGGGAGGTGGAAGGGACGCCATTG
GAGCTCTTTTATAGCAAGCTCCCCGACTCGGAAGTTAATCCCTCCCTTGATTAGTAATTTCCCTCGTCTTATCGCCCCGGATTAGAGCGGTAATTGCTCA
AAATAATCCGTGATTAGTGGTTTCCTTCGATGTTACTCCTCCTCCTCCCGCTAATCGCTTTCTCGCGATGACAGCAG