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Detailed information on CNT30107748


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696875Oryza longistaminataOryza sativa23.239.299.43174forward

Expression of CNT30107748

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MVTKQLEPIQFWKVFDAGERLYPAQGPGYLLHLSHSSVSEGD

>peptide 2 (53 aa)
MYLELAESRRLISLELRPHALLMWKGSEERKENGKALGSDTDKCKLTIQMQAS*

>peptide 3 (44 aa)
TTNITWIDKPHINECIKTSFSMMHCTRPVFLSYQPFYNPAPYYG*

Sequence

>CNT30107748
GCACCACCAATATCACTTGGATAGACAAGCCACATATCAATGAGTGTATCAAAACATCGTTCAGCATGATGCACTGCACTAGGCCAGTCTTCCTTAGTTA
TCAGCCCTTCTACAACCCAGCGCCCTACTATGGTTGACCGTCTGACAGGGTAACCAGGAGGGAAGATTGCTAGGGATCAAGCAACTTGCGTAGATCTTCT
TTGCTTCTGTTGGGATTGGCGTAGAGGGCGTGAGCGAAGATCTTCATGCAGAATTCGCTTGGATAACACTTGTCCAAGATGTCACGGAAAATCTGATCCA
TTCTTGCTTGCGACATTGCCTTATGAAGGGCAGTATTTCTTTTTCTTTTTACCACCATTGGGATGTGCTGGCCTGGAGCTAGATCCATTCTTGCTTGAAA
CATTGCCTTATAAAGGACAGTATTCTTTTCCCTTACATTACCCATTATTGAGATGTACCTGGAGCTAGCTGAGTCTAGGAGATTAATTTCTTTAGAGCTG
AGACCCCATGCATTGCTGATGTGGAAGGGTTCGGAAGAAAGAAAAGAAAACGGGAAAGCTTTGGGATCAGACACTGACAAATGTAAATTAACCATACAAA
TGCAAGCAAGCTAATCAGGGGACATGGTCACCAAACAACTGGAGCCTATTCAATTTTGGAAGGTTTTTGATGCCGGAGAGAGACTCTATCCTGCTCAAGG
TCCAGGTTATCTTCTCCATCTTAGTCACAGCTCCGTCAGTGAAGGTGAT