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Detailed information on CNT30107694


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT007020, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693123Oryza longistaminataOryza sativa91.7453.9788.731367forward
CNT30596548Oryza longistaminataOryza meridionalis90.273.8187.051344reverse complement
CNT30103565Oryza longistaminataOryza rufipogon95.8461.3189.641428forward
CNT30577878Oryza longistaminataOryza barthii95.7721.3589.561427forward
CNT30115703Oryza longistaminataOryza nivara78.1268.7596.561164forward

Expression of CNT30107694

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MTGVSQPVLSKNLGNARTPLAADNVTFRAHGD*

>peptide 2 (33 aa)
MVDFRVASTVPTDIKLPSTCEEHTSTTAILVWA*

>peptide 3 (48 aa)
NNPYTLQRRYLYPKPSLSCPSSLSCYFVTFIEFGSFSSLVESILDGSL*

Sequence

>CNT30107694
CAATAATCCCTATACCTTACAAAGGAGATATTTATACCCCAAACCCAGCCTTTCTTGCCCTTCATCGCTTTCTTGTTATTTTGTGACTTTTATTGAATTT
GGTTCTTTCTCTTCTTTAGTAGAGTCTATTTTGGATGGCAGCCTGTGATATTTCGAGGATCGAATAATCAGGTTGCCTATCTTGGATTTATTTGCGTTGG
AGCAAGGCAAGTTATTATTCCTCCCCTTTGAGCATAATAATCCTATATTCTATATCTCCAGTATCTTGTGCATTAGCCATACATGATTTTGAATGCATAA
CTTGAACATATAGCAAACCAGATATATGCTAGATTTTGCTTAGCCATGCCTAGTTAGATTGCATAAAATATAATAAACTTAGATTGGAACAGTACGGTAG
AAATGGTTGATTTCCGGGTGGCTAGTACTGTTCCAACCGACATAAAATTGCCAAGTACATGTGAAGAACATACGAGTACGACCGCAATTCTCGTATGGGC
ATAGACCTAGCTGATTAAGTTATCTAGCAAAGGTGGTACCTCTGTATAGTGGTTCTTCTTAAGTCCTCGCGCAGGAGGCAAACTTACGCCGAGCAGGGCG
ATTGTAATATTTACCGAGGCGCAGGTAAATATTTGAGATAAATTGTGATATCACAAACTGTGTGTGTATTGTGAAAACCTGGTTGAGATGACGGGGGTCT
CTCAACCAGTTCTCTCTAAAAACCTCGGGAACGCCAGAACTCCTCTCGCTGCTGATAACGTTACGTTCAGAGCGCATGGGGACTAGAGTTCATGGAACAG
GTACCACTGATGTTAGTAACCGAAAAGCTTTGCCATGACTAAGCTGATGAATATTAGCATGTCATGGATTGCGGGTAAAGCGTACATTTACTGCAGTAAA
GTATAAATGAATCTATTCGAATAGCCGTGCTCACGGATTTGAGCATTGGGACTCATATGGTATTTGGTTAGAAACTTAATTCCAAACTTTATTAAATACT
GTTGCATTTAAAACATTCTAGGCTTTCTTCCTCTATATTCTTTGCTTTCTGCAAGTAAACCTAGCTCTACTCAGATATTACCATTTCATGCATTCATTAT
TGAATATAATAGCTTGCTGAGTACGTTGTACTCACCCTTGCTTCAACCCCCCTTTTTCAGAGTCGAATTGATGTTCTTACCGAAGCCGGGAGTTCAATCA
TATAAGTTAGTCCCATTCTAACTTAATCCTCAAGTATAGACTAGATAAATGGTTTAAGTCTATAGCAAAACAGTAGAGTTGAGTCATTCTATAGCTTCTG
CTGTAATAGTTAGCCACAAACTTGTGAATACCCTAATATTATTATGTAATAATATCTCCTTTGGAGTTTTGACCAAATGCATGCAATGAAGATCCAGATT
GTTGAACATGCATCAATCTACTGATCCAGGGCTTGATACAGTCTAAACATGTCGGTTTCCGAATCATTAATTTTAGGACCCGACATCAAC