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Detailed information on CNT30107677


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT001921, E-value = 2e-47

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30689988Oryza longistaminataOryza sativa62.9730.1589.45199forward
CNT30369817Oryza longistaminataOryza glumipatula62.3419.8885.79197forward
CNT30100934Oryza longistaminataOryza rufipogon60.4411.3187.43191reverse complement
CNT30576476Oryza longistaminataOryza barthii62.0338.9782.65196reverse complement
CNT30116369Oryza longistaminataOryza nivara55.3815.8487.43175forward

Expression of CNT30107677

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MILYLADKLRDLRCTFSKDQLHQDDFVSR*

Sequence

>CNT30107677
CTTGCTCCCCCCGTCGTCGGCTGAGAAAAGTGAGAGAGAGAAAGGGAGAAGAGGGGAAATAAGAGGGAAGAGATGAGGTGGCACCCTGACATGTGGGGCC
CACGTGGGTCCCACGCTGACTCAGCCGCCACGTAGGATAAAACCGGTGTCAAAACCGCTGAGGGACCTCGGGTGACTGGTTTTGTATAGTTAAGGGACCC
CGTATATCTGGTTTTGTGGTTCGAGGATGATTTTGTATCTCGCTGACAAGTTGAGGGACCTTCGGTGTACTTTTTCCAAGGACCAGCTGCACCAGGATGA
TTTTGTATCTCGCTGA