Detailed information on CNT30107539


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693853Oryza longistaminataOryza sativa5.7738.6890.37135forward
CNT30457622Oryza longistaminataSaccharum spontaneum5.4720.2981.25128forward
CNT30341910Oryza longistaminataEragrostis tef5.8631.4281.75137forward
CNT3099869Oryza longistaminataOryza rufipogon12.9549.4399.34303forward
CNT30574797Oryza longistaminataOryza barthii37.5472.5697.84878forward
CNT30550410Oryza longistaminataOryza brachyantha6.4638.3294.7151forward

Expression of CNT30107539

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MSIQKFIQLLLEKRTGPNWQLVQGKQALKYCTNS*

>peptide 2 (29 aa)
MQQQADGWFLRRTSVLPQAYMNHASSLYI*

>peptide 3 (70 aa)
MRKRKANCALPHPITCQIMTQIHRTFSIVLNLRTQLAISDMNRRHPTISIMLCIIFNIRIQLCQSAMASY*

>peptide 4 (68 aa)
MTLSCFFFLENFLCAIISSKFKVIYCFPLKHSSNTVEQFLSSRFHRIQVNVPPNSYIFPILHFSILTF*

>peptide 5 (78 aa)
MCHPILIFFLFYIFRSLRSEEALSGILADKGAHRLEKQPGYVQIYGAFLQCYLTNENRKYSHQEECQFQNDIGGSCSH*

>peptide 6 (44 aa)
MSPLESLWYDLILFFFFGKFPLCYYLFKVQSHILFSLEAFKQHG*

>peptide 7 (36 aa)
MLMNLDRYMNVGNTRMTYIMKRREYMATTNNEKKES*

>peptide 8 (66 aa)
MDKSVLMMLMAAAAVILLWLPXXXXPPPPPFLLFIPVVMMLLLFSLVLVPSRNCTGIPQLQSVTSE*

>peptide 9 (49 aa)
MIQYATAGRWLVPQENFCSTSSLYEPCLKPIYMNHGCEDWEEKKWTNEC*

Sequence

>CNT30107539
CGGTGTCAAACATTTTGAAACGGAGGGAGTATCATATTTAATACGAGTATATACCGGTAACAGGTAGGAACAAAACGTGGTCACACTTTTTCACACAGGT
AAACATACCATCTCGCTCTTGCCGCTAGATTCAAAGTGTACAGGCTGCTGGCCATATATATAGTAGCTTGGCCTGTGTTAACTTCTCACTGGAAACATCC
ATACAACACTTCCTCATCACAACACACACATGAACACCGGAGAGTGGAGCAACCGGTGAGCCGCCGGCCGGAGGAGGCAGTCCAGTCAACAGCTGCAGGG
GAGGCCAAGATGGACAAGAGCGTGCTGATGATGTTGATGGCGGCGGCGGCGGTGATCCTCCTGTGGCTCCCATNNNNNNNNNNACCGCCGCCGCCGCCAT
TCTTGCTCTTCATCCCCGTCGTGATGATGCTCCTTCTCTTCTCCCTGGTTCTTGTCCCGTCTAGAAACTGTACTGGCATCCCCCAACTTCAGTCAGTAAC
ATCAGAATAAGAACGCCTGATGGTCAGGTACCTTCTTTTGAGTCTTATTCCTTATCCGTGTGGCATTTCCTCACACTTATTGGGTAGGAGTATACTCGTA
TGATATATGATACAGTATGCAACAGCAGGCAGATGGCTGGTTCCTCAGGAGAACTTCTGTTCTACCTCAAGCCTATATGAACCATGCCTCAAGCCTATAT
ATATGAACCATGGTTGTGAAGACTGGGAAGAAAAAAAATGGACAAATGAATGTTAGCTAGGAATTCCTGCTGGTGAAGGATTTCCAGGATTTTTTTGTGC
CTGTGGAAAGCTGTAGAGTAGTAGGCCGGCGGTCAGCACCACGGCGCCTGCAACAAAGCCAGGAGGGAGAGTAGACGCCACACCGATGTACGGCAACGGT
AGGGTGAAGGCGTAGATGGACAGTGGAACTGCATGCACCAAGAAATTTAGGCATCAGAAAAGATTATAGTTCTCTCTGCAGGTCTGCAGTTTACATTTAT
TAATATTTAGCATCTTCTTGTATGGAGTATTTCCTCCGTTTCACAATGTAAGTCATTCTAGCATTCCTCATATTCATATTGATGCTAATGAATCTAGATA
GATATATGAATGTAGGGAATACTAGAATGACTTACATTATGAAACGGAGGGAGTACATGGCAACGACAAACAATGAGAAAAAGGAAAGCTAACTGTGCTC
TTCCTCATCCTATAACTTGCCAAATTATGACTCAAATACATCGAACTTTCAGCATTGTATTGAACCTTAGGACTCAGTTGGCTATTAGTGACATGAACAG
GAGACACCCAACAATATCAATAATGCTATGCATTATCTTCAACATCAGGATTCAGCTGTGCCAGTCTGCTATGGCTAGCTACTAGTGGCATGAACAGCAG
ACACTAGTACCCAACAGTGATAACAATGCTACACTAAGGTGGTGTTAATAATTGGCTGTAACTCTGTTGAGTCAAGGCCGGGATATAAATTCCATTATCT
AAAAAAACACTAAGGTGGTGTTCGAATCTCCCGAAGATGAAGATAAAGATTAAGTGTTTCACACAAAACGAGGTGGTAATAACATGTGATTAATTAAGAT
TTAATTATTACAAACTTGAAAAATGGATTAATATGATATTTTAGAACAACTTTCATATAGGAAGTTTTCGCATGAAACACACTATTTAGCAGTTTGAAAA
GCGTGCCATGAGTATCCAAAAGTTTATCCAACTTTTGTTGGAGAAAAGAACCGGGCCTAATTGGCAACTGGTCCAGGGTAAACAGGCCCTCAAATACTGC
ACTAACTCTTAAAAAAAAAATCCTAAATGATCCATTGAAACAAAGAAATGAGCCCTTTGGAGTCCCTATGGTATGACCTTATCCTGTTTTTTTTTTTTGG
AAAATTTCCTTTGTGCTATTATCTCTTCAAAGTTCAAAGTCATATACTGTTTTCCCTTGAAGCATTCAAGCAACACGGTTGAGCAATTCCTGTCTTCTAG
ATTCCACAGGATTCAAGTTAATGTGCCACCCAATTCTTATATTTTTCCTATTCTACATTTTTCGATCCTTACGTTCTGAAGAAGCCCTAAGTGGCATCCT
TGCTGATAAGGGAGCACACAGGTTGGAAAAACAGCCAGGATATGTGCAAATTTATGGAGCCTTCTTACAGTGTTACTTAACAAACGAAAACAGGAAGTAT
AGCCATCAAGAAGAGTGCCAGTTCCAAAATGATATTGGAGGTTCATGTAGTCATTAAGTAAGAACCAGATTAAAAGCATGCAGATAATGGGACAATAATA
TAAGAAAGTTATAGATCTAAGTTTTGTGTTAGTTTTTCC