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Detailed information on CNT30107537


BLAST search results

BLAST vs Swiss-Prot:
sp|O23755|EF2_BETVU, E-value = 9e-103

BLAST vs NONCODE:
NONGMAT000778, E-value = 3e-49

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674834Oryza longistaminataSetaria viridis18.1726.0591.62167forward
CNT30532843Oryza longistaminataEucalyptus grandis24.1630.3390.54222forward
CNT30316236Oryza longistaminataCorylus avellana26.8853.8187.45247forward
CNT30547574Oryza longistaminataIpomoea triloba17.5245.3588.82161forward
CNT30512729Oryza longistaminataJuglans regia36.1332.2685.84332forward
CNT30373394Oryza longistaminataArabidopsis thaliana27.3144.6683.67251forward
CNT30276060Oryza longistaminataChenopodium quinoa26.3338.1786.36242forward
CNT30379936Oryza longistaminataManihot esculenta27.4275.4584.92252forward
CNT30405823Oryza longistaminataBeta vulgaris16.653490.2153forward
CNT30488117Oryza longistaminataOlea europaea18.534.8487.65170forward
CNT30711584Oryza longistaminataGlycine max51.867.6184.24476forward
CNT3045373Oryza longistaminataPrunus dulcis23.9428.0685220forward
CNT30191304Oryza longistaminataSecale cereale38.1926.9891.17351forward
CNT30300473Oryza longistaminataTriticum aestivum38.0836.1688.29350forward
CNT30224354Oryza longistaminataHordeum vulgare37.7666.8689.05347forward
CNT30395070Oryza longistaminataTriticum turgidum38.1945.8888.89351forward
CNT30561656Oryza longistaminataActinidia chinensis36.6724.0785.46337forward
CNT30510505Oryza longistaminataSolanum lycopersicum32.127.1689.83295forward
CNT30552635Oryza longistaminataOryza glaberrima95.5484.5999.2878forward
CNT30143941Oryza longistaminataMedicago truncatula26.3354.0283.06242forward
CNT30440797Oryza longistaminataAegilops tauschii65.2982.4287.17600forward
CNT30313757Oryza longistaminataCamelina sativa28.5129.8783.97262forward
CNT3059659Oryza longistaminataArabidopsis lyrata23.8350.4680.82219forward
CNT30612508Oryza longistaminataArabis alpina28.2910.2485260forward
CNT30135610Oryza longistaminataLolium perenne26.0128.2587.45239forward
CNT3014085Oryza longistaminataZea mays60.7291.4887.46558forward
CNT30605685Oryza longistaminataGossypium raimondii36.1343.4686.75332forward
CNT30683923Oryza longistaminataTriticum urartu38.1938.3687.75351forward
CNT30722731Oryza longistaminataTriticum spelta24.4844.0385.33225forward
CNT30345702Oryza longistaminataEragrostis tef27.6431.4485.83254forward
CNT30361520Oryza longistaminataSorghum bicolor27.6437.1387.8254forward
CNT30596064Oryza longistaminataOryza meridionalis55.7110099.22512forward
CNT30359537Oryza longistaminataLactuca sativa21.4429.8984.77197forward
CNT30369654Oryza longistaminataOryza glumipatula46.1448.1899.76424forward
CNT30154011Oryza longistaminataPrunus persica11.8638.7983.49109forward
CNT30332479Oryza longistaminataDioscorea rotundata12.339.9385.84113forward
CNT30149525Oryza longistaminataBrachypodium distachyon12.437.7585.96114forward
CNT30100253Oryza longistaminataOryza rufipogon93.1477.6899.42856forward
CNT30575129Oryza longistaminataOryza barthii87.0598.2899.25800forward
CNT30497701Oryza longistaminataDigitaria exilis31.9990.4690.48294forward
CNT30116094Oryza longistaminataOryza nivara79.1182.6199.31727forward
CNT30604019Oryza longistaminataOryza punctata35.897.3490.58329forward
CNT3050899Oryza longistaminataCucumis sativus14.3652.3882.58132forward

Expression of CNT30107537

Peptides detected in this lncRNA

>peptide 1 (60 aa)
NYKLGRPEQKYADLQRQAKGNNKYHSTETQQECEHYNLDSKKMIQVPHPLHHDRVKIVSQ*

>peptide 2 (57 aa)
MKYDNESSSLSSRPTRTCKGNGTTHAAAKNLELVLEIGEGSHLLLETLPLADILHQG*

>peptide 3 (32 aa)
MSQWSNTHWGKAWPDVAALSWLENPKDSMTGR*

>peptide 4 (30 aa)
MLGPVVSGPKHQIFFARSLSQPNSSDRILER

Sequence

>CNT30107537
AACTACAAACTAGGAAGACCGGAACAAAAATATGCAGACTTACAACGGCAAGCCAAAGGAAACAATAAATACCACTCAACAGAAACGCAACAAGAATGTG
AACACTATAACTTAGACAGCAAAAAGATGATCCAGGTTCCACATCCGTTACATCACGACAGAGTAAAAATAGTTTCTCAGTAGCACGCGAACATAGGATT
GTTGATGTGAAACACATGCATTCGACAAAAGGGAAATGAAATACGACAACGAAAGCAGTTCTCTTAGCAGTAGACCAACTAGAACATGTAAGGGTAACGG
CACAACACATGCGGCGGCCAAAAATTTAGAGCTTGTCCTCGAAATCGGAGAGGGGAGTCATCTGCTCCTTGAGACCCTTCCTCTTGCGGATATCCTGCAC
CAGGGTTGAAGCCTGCGAGCCGGCTTCAAGAGGATCAGAGGTCATCATGTCCCAATGGTCGAACACACACTGGGGGAAGGCCTGGCCAGATGTCGCAGCC
CTAAGCTGGCTTGAGAACCCAAAGGACTCGATGACAGGGAGGTAAGCCTTGATGTTGTACAGAGGGGTACCAGGTAGACGGGCTCAAGAAGCCTGGGCTT
TGCTGTCAGCTGAGAAGCATAGATGACCCTCCTGGCCGTGGGAATGACCTGGCCACCACCTCTGTGAATAGCATCAGCATGGAGAACAACATCGCACACC
TCAAAGCAGATACCACGCATGTTCTCCTCAGCCAACGCACCCTCCTTTGATGCCCACTGGAAACCAGCCACAACGGAATCCTTGATTTCATTCAGATACT
GAACTCCCTTACACATATCAACCACCATGTTGGGGCCAGTTGTCTCAGGTCCAAAACACCAGATCTTCTTTGCAAGATCCTTGTCCCAGCCGAACTCCTC
AGACAGGATCTTGGAGCGC