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Detailed information on CNT30107513


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT007200, E-value = 2e-129

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30369441Oryza longistaminataOryza glumipatula98.4598.7695.75636forward
CNT3099965Oryza longistaminataOryza rufipogon97.6893.3496.2631forward
CNT30577721Oryza longistaminataOryza barthii91.4999.8395.6591forward
CNT30115706Oryza longistaminataOryza nivara46.1310095.97298forward

Expression of CNT30107513

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MSYASCVVIALPRAARAMSDLLQLGSCPVGLP*

>peptide 2 (32 aa)
MHGFVREIGKKIGGACCWLQQQNNHVFPPLGH*

>peptide 3 (58 aa)
LFFLPCLFFSFLQAELPSHFFPSNLLQTLEIHPCMSQHSNLKYPSLPSIQISCTCMGS*

>peptide 4 (92 aa)
FSFSLACSFLSCKLSSHLTSSHQISSKHLRSIPACHNTAISSIQASHPSKYLAHAWVREGDREENRWSLLLVAAAKQPCFSSTWSLMQDFRA*

Sequence

>CNT30107513
CTTTTCTTTCTCCCTTGCCTGTTCTTTTCTTTCTTGCAAGCTGAGCTCCCATCTCACTTCTTCCCATCAAATCTCCTCCAAACACTTGAGATCCATCCCT
GCATGTCACAACACAGCAATCTCAAGTATCCAAGCCTCCCATCCATCCAAATATCTTGCACATGCATGGGTTCGTGAGGGAGATCGGGAAGAAAATAGGT
GGAGCTTGCTGCTGGTTGCAGCAGCAAAACAACCATGTTTTTCCTCCACTTGGTCATTGATGCAAGATTTTAGAGCATAGAACAGTTGCAATTCGTTTCT
CTCCACTCCGACGATTACAACCCCCATCCCCCTCGGTTTACTCAGATTCGGAGAATTCGGAGTACGTGGAGCAAGACTCTGAGGTTGAGTGTGTTTCCAC
GCAGCAGCAAGGAGAGGATTCCGGTTATGAGTTATGCTTCTTGTGTGGTCATTGCTCTGCCGAGGGCGGCGAGGGCAATGAGTGATCTCTTGCAGCTTGG
CTCTTGCCCGGTTGGTTTGCCCTAATGGGGTTGTGGCACCACCGGTTTTATCTTTTGCTTATGAACTCTATTTGAGACTTCCGCTGCTATATTTATGTGT
TGTATGTTGGGACCTCGGACTCTTTTATGTGTCATGTACCTCGCTG