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Detailed information on CNT30107444


BLAST search results

BLAST vs Swiss-Prot:
sp|P93779|RL5_SOLME, E-value = 8e-27

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690402Oryza longistaminataOryza sativa40.5167.7698.55414forward
CNT30674803Oryza longistaminataSetaria viridis10.4720.7889.72107forward
CNT30375004Oryza longistaminataArabidopsis thaliana9.3931.1783.3396forward
CNT30435495Oryza longistaminataAegilops tauschii9.4942.9282.4797reverse complement
CNT3066768Oryza longistaminataLeersia perrieri12.2337.8891.2125forward
CNT30369416Oryza longistaminataOryza glumipatula39.4310097.77403forward
CNT3099509Oryza longistaminataOryza rufipogon65.4693.3196.86669forward
CNT30574818Oryza longistaminataOryza barthii64.9792.0997.44664forward

Expression of CNT30107444

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MDLLVQCFHAISVNSLLEVLTEVGLEFLRFLLSHRLQQVHKKKIYPDENQNKAD*

>peptide 2 (31 aa)
MDITNNLYQNHRPASYTSCGLPVPSWPIWPR*

>peptide 3 (63 aa)
MAAWTFLYSASMPSASIPFLRYSLKWAWNFSGSSSAIDCNKYIRRKFILMRIKIKQTELNSNK*

Sequence

>CNT30107444
CTGAAGATTGACTGCCCGTTGCTAAAAAGGAAAAAGTAACATAAAACACTGACAAGTGAAGAGCCAGGCAGAACACATTTTGATCAATATCCAAACGGCA
GCTTCTCACATAAATAAGATAACCGATAGCTCAAGGTTGAGAATCAAAAACCGAAAGAAATAGGTTCTTTGAGTAGAGTGCAGAACATAAACAAAAATGC
CTGTTGCAAATTGCAAGACTACAGGTAAACTTAAATGCCATATGGAGTTTGTTTGGCAGCATAAGATGAAACTACTGTGATAAGGCTACACTCTCTCACT
CGTCATCCTCTTCCTCGTCATCATCATCAGCACCAGCTGAGGAGTTGAGAGCATTCAATCTTTCGACGAGCCTGGCCTTCCTCTGCTCGTAGGTCAGCTT
CTTGAGGTTGTATCTGCGGCAAAGAGGCAAGTTAGTTACAATCATACATGGACATCACAAATAATCTTTACCAAAATCATCGGCCAGCTTCATATACCTC
TTGTGGGTTGCCGGTTCCTTCTTGGCCGATTTGGCCACGGTAGGATCAGCGCGGATGGCAGCATGGACCTTCTTGTACAGTGCTTCCATGCCATCAGCGT
CAATTCCCTTCTTGAGGTACTCACTGAAGTGGGCTTGGAATTTCTCAGGTTCCTCCTCAGCCATAGACTGCAACAAGTACATAAGAAGAAAATTTATCCT
GATGAGAATCAAAATAAAGCAGACTGAGCTAAACAGTAACAAATAATCCAGCCTACTTTATATAATGCTTTAGTCAACGTTATAAACATCAAGGCAGCTA
CATAATTCCTAATACAACACACAGCAATGTCAAAATAGCACGAACAATTGATCTAATAGTGCCAGCTCACCCTCATGTAGTCAGCCACGTGCCCACCGTA
GATGTACTTGCGGTGAATATCAGAATCAAGCTGCTTCTCGTCCTTCTTGAACCCAGCAAACCTCTTGTCACTGTGAGGAATGTCAAGACCACCATCCAAA
GCTCCCTGCAGAGAAGAACAGA