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Detailed information on CNT30107421


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7XR60|MTK2_ORYSJ, E-value = 2e-29

BLAST vs NONCODE:
NONORUT004829, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30370134Oryza longistaminataOryza glumipatula78.3481.9796.19709forward
CNT30101583Oryza longistaminataOryza rufipogon72.626.2497.26657forward
CNT30576147Oryza longistaminataOryza barthii23.4310095.75212forward

Expression of CNT30107421

Peptides detected in this lncRNA

>peptide 1 (59 aa)
CISSFYYARNKRSDSQEQNMRAPTQTHPKTPPTRAQELLRQQNYSCGPAWFMLRWKKEE*

>peptide 2 (74 aa)
MHNHLLDAFKLASSLQDCLCTIKGTSLTRSSLAGILNRLKILNMSNSNYSPTYVWSNLVNRSRVRIMHKASEHR*

>peptide 3 (52 aa)
AYHHFIMQGIKGRTHRSKICAHPHKHTRKHPLLGHKSYCANKTTPAVLPGLC*

>peptide 4 (37 aa)
MLSNWRLPFRIAFAQLRARRSHEALLLASSIDSKSST*

>peptide 5 (34 aa)
MVSLISPDQTIVHAQSLARCFQTGVFPSGLPLHN*

>peptide 6 (33 aa)
MVQFSKQKSREDHAQGIGTQIKNLKMAFKCDFKF

Sequence

>CNT30107421
CTGCATATCATCATTTTATTATGCAAGGAATAAAAGGTCGGACTCACAGGAGCAAAATATGCGCGCACCCACACAAACACACCCGAAAACACCCCCTACT
AGGGCACAAGAGCTATTGCGCCAACAAAACTACTCCTGCGGTCCTGCCTGGTTTATGTTAAGATGGAAAAAAGAAGAGTGAAAAGGTACAGGCGAAATTA
CTGAACCTACAATCATAACTTGTACAAGCTGTAAGTAATCAGGTCTACGTGATGAAAAGGAACAGAAGGGGGACTACATCTCTTTGAAATAAAACAACAA
CAATCTATTTACCGAAAACTATCAACTTTATTTGTAATAACACACTCGTCCATATCCATGGACATAAACGTTTGTGCTGAAATTCCAATTATTCAGCTCA
TAAACTAAGAAGCCCGGAAGCTGGTGGAAGGCTTAGCCAAGTAGTGAAAAAAAACATCGGTCTTGCAGAGCGCACACACTTTTCATGATCCAAAGTACTA
AAAGCACAAATAACCGGCCAATTCTGCTTTGTAATAGGCACAGATAATCGCTGATGGTAAACAGATGAAAACTTTTGTCTCCTCAATCAGAAAGGTCGTG
TAGATGGTTAGCCTTATCAGTCCCGATCAAACGATTGTACATGCACAATCACTTGCTCGATGCTTTCAAACTGGCGTCTTCCCTTCAGGATTGCCTTTGC
ACAATTAAGGGCACGTCGCTCACACGAAGCTCTCTTGCTGGCATCCTCAATCGACTCAAAATCCTCAACATGAGCAATTCCAACTATTCTCCTACATATG
TATGGTCCAATTTAGTAAACAGAAGTCGCGTGAGGATCATGCACAAGGCATCGGAACACAGATAAAAAATTTGAAAATGGCGTTTAAATGTGATTTTAAG
TTCTT