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Detailed information on CNT30107391


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30595765Oryza longistaminataOryza meridionalis52.1247.2297.58578forward
CNT30100546Oryza longistaminataOryza rufipogon83.6885.1498.81928forward

Expression of CNT30107391

Peptides detected in this lncRNA

>peptide 1 (55 aa)
MNSSTYEHLARLRRLYIVYWLPLLNVSLITHDMLAWKGSFELIMRFAGNFSRNVQ*

>peptide 2 (89 aa)
SPPPFEPPSPAPPRATARRSRTDLVNSSSLTTLPAPAPATTQIAMPFSASSRRPLPSTVPLRRARGFSDSCKGTVTSLWQQLHILQENL*

>peptide 3 (34 aa)
MRLNNICLLLEGKRCMTVLKQMKNSSFYEVNFCC*

Sequence

>CNT30107391
CTCTCCTCCCCCTTTTGAGCCGCCATCGCCGGCACCGCCGCGCGCGACGGCGCGGCGCAGCCGCACCGATCTCGTGAATTCCTCCTCCCTGACCACTCTC
CCGGCCCCGGCCCCGGCCACCACCCAAATCGCAATGCCTTTCTCCGCTAGCTCCCGCCGTCCCCTCCCCTCGACGGTGCCGTTGCGGCGCGCGCGTGGTT
TCTCAGATTCATGCAAGGGGACGGTGACAAGCTTGTGGCAGCAACTGCACATCTTGCAAGAAAATCTTTAGGGTTTTTCAGACCATACCGATGATTTTCT
TGCAAGTTGTGCAGTTGTTGTCTCAAGCTTGCTGCCTCCCTTTGCCAAAACTATCAAGTGAGAAAGCAGGGTAGAGTTATTCAATTACAGGCACACAAGA
CAAAATTAAAGTAATAAACATGTCTGACCAACAAACACAATGATTAATAACAAAACTCTTGTGGCATGAGATAATATTGAAGCATGATGCTTACAACAGT
TATAATATGAAAACTAGATGGAGGCAGTGCCACCAGGCAATGGCAAATGAACTCATCAACATATGAACATCTAGCAAGATTACGTCGTCTCTACATTGTG
TATTGGCTTCCACTGCTGAATGTTTCTCTTATTACCCATGACATGCTTGCTTGGAAGGGCAGTTTTGAGTTGATCATGAGGTTTGCAGGAAATTTCTCTA
GGAATGTCCAGTGAGTGATCCTGTAAATTTTGGAGTTGATTGTTCATCAGAATAGCACTATAATTTTCCTGTCATCTGTGCTTTGGTAGCGGAACGTTCA
TTGTCCCATGCTACTCAGCTTTGTACTTTTGTAAATCAAATGAGACTGAATAATATATGTTTACTTTTGGAAGGAAAAAGATGTATGACTGTTCTCAAGC
AAATGAAAAATTCCAGCTTTTATGAAGTTAATTTCTGCTGTTAACATGCTACCTAGTGCATTCCTAGAATCCTAGTTAATGTCTTAAACCTTGGTTGATG
AGCGTTCCAAGCTGCTTATCCCTATTCAGCAGAATGCAAGGTTTGTAGGGATTACTATTTGAGAAAGGAAAACCAGTGCCTAGGTGCTTTCCTGAGCATG
TAGGTTACT