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Detailed information on CNT30107387


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691685Oryza longistaminataOryza sativa100.2684.3698.43766forward
CNT30459552Oryza longistaminataSaccharum spontaneum20.1610.4388.96154forward
CNT309847Oryza longistaminataZea mays20.1611.3488.96154forward
CNT30495950Oryza longistaminataDigitaria exilis20.6812.4289.87158forward
CNT30556241Oryza longistaminataPanicum hallii20.168.6491.56154forward

Expression of CNT30107387

Peptides detected in this lncRNA

>peptide 1 (95 aa)
RPDPAHSPPPFEPPSPAPPRATARRSRTDLVNSSSLTTLPAPAPATTQIAMPFSASSRRPLPSTVPLRRARGFSDSCKGTVTSLWQQLHILQENL*

>peptide 2 (30 aa)
AQIRRTLLPLLSRHRRHRRARRRGAAAPIS*

Sequence

>CNT30107387
CGCCCAGATCCGGCGCACTCTCCTCCCCCTTTTGAGCCGCCATCGCCGGCACCGCCGCGCGCGACGGCGCGGCGCAGCCGCACCGATCTCGTGAATTCCT
CCTCCCTGACCACTCTCCCGGCCCCGGCCCCGGCCACCACCCAAATCGCAATGCCTTTCTCCGCTAGCTCCCGCCGTCCCCTCCCCTCGACGGTGCCGTT
GCGGCGCGCGCGTGGTTTCTCAGATTCATGCAAGGGGACGGTGACAAGCTTGTGGCAGCAACTGCACATCTTGCAAGAAAATCTTTAGGGTTTTTCAGAC
CATACCGATGATTTTCTTGCAAGTTGTGCAGTTGTTGTCTCAAGCTTGCTGCCTCCCTTTGCCAAAACTATCAAGTGAGAAAGCAGGGTAGAGTTATTCA
ATTACAGGCACACAAGACAAAATTAAAGTAATAAACATGTCTGACCAACAAACACAATGATTAATAACAAAACTCTTGTGGCATGAGATAATATTGAAGC
ATGATGCTTACAACAGTTATAATATGAAAACTAGATGGAGGCAGGTTTGCAGGAAATTTCTCTAGGAATGTCCAGTGAGTGATCCTGTAAATTTTGGAGT
TGATTGTTCATCAGAATAGCACTATAATTTTCCTGTCATCTGTGCTTTGGTAGCGGAACGTTCATTGTCCCATGCTACTCAGCTTTGTACTTTTGTAAAT
CAAATGAGACTGAATAATATATGTTTACTTTTGGAAGGAAAAAGATGTATGACTGTTCTCAAGC