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Detailed information on CNT30107359


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 3e-101

BLAST vs NONCODE:
NONMEST001181, E-value = 3e-89

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691404Oryza longistaminataOryza sativa97.6489.4395.05829forward
CNT30595696Oryza longistaminataOryza meridionalis99.5379.4994.56845forward
CNT30603673Oryza longistaminataOryza punctata81.8670.2790.36695forward

Expression of CNT30107359

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MVSELSTSKVMVFPVKVFTKICIPPRRRSTRWSVDSFWML*

>peptide 2 (33 aa)
KYKSGQHNPSSITSLQNNLLYPIGHSKTQDKIK*

>peptide 3 (53 aa)
MQMSKLSTYLGSNPTYSYSILLSHRKLFHKTNISYGLDGPLNQTQVDISTTNT*

>peptide 4 (43 aa)
MRRCWSGGMPSLSWILALTLSMVSEDSTSRVIVLPVNVFTKICI

Sequence

>CNT30107359
CCAAATATAAATCAGGACAGCATAATCCTTCCAGCATCACTTCACTCCAGAATAATCTTTTATATCCCATAGGTCATAGCAAAACACAAGATAAAATTAA
GTGACGATTTAATAAGAATATGCATCATTTTCGAACTTGCAACTCAGATAAAACATCGACAGGAATGAGATGCAAATGAGCAAATTGAGCACATATTTAG
GTTCAAATCCAACTTATTCATATAGCATACTGCTGTCCCACAGGAAACTGTTTCATAAAACTAACATATCATACGGACTCGATGGTCCATTAAACCAGAC
ACAAGTAGACATCAGCACCACAAATACTTGACGAACAGAGGCTCGGGACGAACAGGCACAGCGGCAGCTCCGCCAAACTGGCTGATTACTGACCACCACG
GAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGC
TGGTCTGGGGGAATCCCCTCCTTGTCCTGGATCTTGGCCTTCACATTATCAATGGTGTCGGAGCTCTCAACCTCCAAAGTGATGGTCTTCCCAGTCAAGG
TCTTCACGAAGATCTGCATACCACCACGAAGGCGGAGCACAAGGTGGAGTGTCGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTGCCATCCTCCAG
CTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTATCTTGGATCTTAGCCTTGACATTATCGATGGTGTCAGAGGACTCCACC
TCGAGGGTGATAGTCTTGCCGGTCAATGTCTTCACAAAGATCTGCATCT