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Detailed information on CNT30107357


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 9e-102

BLAST vs NONCODE:
NONMEST001181, E-value = 2e-96

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691328Oryza longistaminataOryza sativa99.210095.95741forward
CNT30303356Oryza longistaminataTriticum aestivum61.9850.1692.22463forward
CNT30396078Oryza longistaminataTriticum turgidum61.9824.4591.36463forward
CNT30253103Oryza longistaminataAvena sativa61.8562.6992.86462forward
CNT30667831Oryza longistaminataTriticum dicoccoides61.8560.3190.91462forward
CNT30460404Oryza longistaminataSaccharum spontaneum61.8514.691.34462forward
CNT30143305Oryza longistaminataLolium perenne61.8569.3794.59462forward
CNT30686718Oryza longistaminataTriticum urartu61.9821.2190.71463forward
CNT30722378Oryza longistaminataTriticum spelta57.1670.3591.57427forward
CNT30150050Oryza longistaminataBrachypodium distachyon61.9834.690.28463forward
CNT30575387Oryza longistaminataOryza barthii76.5710095.1572forward
CNT30580899Oryza longistaminataEchinochloa crusgalli61.8595.6590.91462forward
CNT30116053Oryza longistaminataOryza nivara92.2498.0198.55689forward
CNT30592842Oryza longistaminataEragrostis curvula61.5856.5891.74460forward

Expression of CNT30107357

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MVSELSTSKVMVFPVKVFTKICIPPRRRSTRWRVDSFWML*

>peptide 2 (53 aa)
MQMSKLSTYLGSNPTYSYSILLSHRKLFHKTNISYGLDGPLNQTQVDISTTNT*

>peptide 3 (42 aa)
MRRCWSGGMPSLSWILALTLSMVSEDSTSRVIVLPVNVFTKIC

Sequence

>CNT30107357
GTGACGATTTAATAAGAATATGCATCATTTTCGAACTTGCAACTCAGATAAAACATCGACAGGAATGAGATGCAAATGAGCAAATTGAGCACATATTTAG
GTTCAAATCCAACTTATTCATATAGCATACTGCTGTCCCACAGGAAACTGTTTCATAAAACTAACATATCATACGGACTCGATGGTCCATTAAACCAGAC
ACAAGTAGACATCAGCACCACAAATACTTGACGAACAGAGGCTCGGGACGAACAGGCACAGCGGCAGCTCCGCCAAACTGGCTGATTACTGACCACCACG
GAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGC
TGGTCTGGGGGAATCCCCTCCTTGTCCTGGATCTTGGCCTTCACATTATCAATGGTGTCGGAGCTCTCAACCTCCAAAGTGATGGTCTTCCCAGTCAAGG
TCTTCACGAAGATCTGCATACCACCACGAAGGCGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTGCCATCCTCCAG
CTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTATCTTGGATCTTAGCCTTGACATTATCGATGGTGTCAGAGGACTCCACC
TCGAGGGTGATAGTCTTGCCGGTCAATGTCTTCACAAAGATCTGCAT