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Detailed information on CNT30107350


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 4e-101

BLAST vs NONCODE:
NONMEST001181, E-value = 2e-65

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30190515Oryza longistaminataSecale cereale51.9153.4691.74448forward
CNT30301827Oryza longistaminataTriticum aestivum53.8860.1692.26465forward
CNT30395844Oryza longistaminataTriticum turgidum54.2330.2592.31468forward
CNT30242975Oryza longistaminataAvena sativa53.8863.0192.9465forward
CNT30666718Oryza longistaminataTriticum dicoccoides54.2370.2790.38468forward
CNT30141380Oryza longistaminataLolium perenne53.8850.1692.26465forward
CNT3067610Oryza longistaminataLeersia perrieri54.1126.2590.36467forward
CNT30349330Oryza longistaminataEragrostis tef54.2330.1991.67468forward
CNT30150477Oryza longistaminataBrachypodium distachyon54.2334.9891.03468forward
CNT30100520Oryza longistaminataOryza rufipogon88.0676.6196.18760forward
CNT30583297Oryza longistaminataEchinochloa crusgalli54.2324.3589.74468forward
CNT30550711Oryza longistaminataOryza brachyantha74.2891.5788.92641forward

Expression of CNT30107350

Peptides detected in this lncRNA

>peptide 1 (35 aa)
GSKYKSGQHNPSSITSLQNNLLYPIGHSKTQDKIK*

>peptide 2 (46 aa)
MRRCWSGGMPSLSWILALTLSMVSEDSTSRVIVLPVNVFTKICICKK

>peptide 3 (53 aa)
MQMSKLSTYLGSNPTYSYSILLSHRKLFHKTNISYGLDGPLNQTQVDISTTNT*

>peptide 4 (61 aa)
MRRCWSGGMPSLSWILALTLSMVSEDSTSRVMVLPVRVFTKICMPPLRRRTRWSVDSFWML*

Sequence

>CNT30107350
TGGCTCCAAATATAAATCAGGACAGCATAATCCTTCCAGCATCACTTCACTCCAGAATAATCTTTTATATCCCATAGGTCATAGCAAAACACAAGATAAA
ATTAAGTGACGATTTAATAAGAATATGCATCATTTTCGAACTTGCAACTCAGATAAAACATCGACAGGAATGAGATGCAAATGAGCAAATTGAGCACATA
TTTAGGTTCAAATCCAACTTATTCATATAGCATACTGCTGTCCCACAGGAAACTGTTTCATAAAACTAACATATCATACGGACTCGATGGTCCATTAAAC
CAGACACAAGTAGACATCAGCACCACAAATACTTGACGAACAGAGGCTCGGGACGAACAGGCACAGCGGCAGCTCCGCCAAACTGGCTGATTACTGACCA
CCACGGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTGCCATCCTCCAGCTGCTTGCCAGCAAAGATGAGGC
GCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTATCAGAAGACTCCACCTCGAGGGTGATGGTCTTGCCGGT
CAGAGTCTTCACGAAGATCTGCATGCCTCCCCTGAGACGGAGGACAAGGTGGAGTGTCGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTGCCATCC
TCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTATCTTGGATCTTAGCCTTGACATTATCGATGGTGTCAGAGGACT
CCACCTCGAGGGTGATAGTCTTGCCGGTCAATGTCTTCACAAAGATCTGCATCTGCAAGAAAT